The relationship between the gut microbiome and host gene expression: a review

RG Nichols, ER Davenport - Human genetics, 2021 - Springer
Despite the growing knowledge surrounding host–microbiome interactions, we are just
beginning to understand how the gut microbiome influences—and is influenced by—host …

Host microbiota can facilitate pathogen infection

EJ Stevens, KA Bates, KC King - PLoS pathogens, 2021 - journals.plos.org
Animals live in symbiosis with numerous microbe species. While some can protect hosts
from infection and benefit host health, components of the microbiota or changes to the …

Bacterial c-di-GMP has a key role in establishing host–microbe symbiosis

N Obeng, A Czerwinski, D Schütz, J Michels… - Nature …, 2023 - nature.com
Most microbes evolve faster than their hosts and should therefore drive evolution of host–
microbe interactions. However, relatively little is known about the characteristics that define …

TaxonKit: A practical and efficient NCBI taxonomy toolkit

W Shen, H Ren - Journal of genetics and genomics, 2021 - Elsevier
Abstract The National Center for Biotechnology Information (NCBI) Taxonomy is widely
applied in biomedical and ecological studies. Typical demands include querying taxonomy …

Host and microbiome jointly contribute to environmental adaptation

C Petersen, IK Hamerich, KL Adair… - The ISME …, 2023 - academic.oup.com
Most animals and plants have associated microorganisms, collectively referred to as their
microbiomes, which can provide essential functions. Given their importance, host-associated …

Microbiota-brain interactions: Moving toward mechanisms in model organisms

J Nagpal, JF Cryan - Neuron, 2021 - cell.com
Changes in the microbiota are associated with alterations in nervous system structure-
function and behavior and have been implicated in the etiology of neuropsychiatric and …

Xenobiotic metabolism and transport in Caenorhabditis elegans

JH Hartman, SJ Widmayer… - Journal of Toxicology …, 2021 - Taylor & Francis
Caenorhabditis elegans has emerged as a major model in biomedical and environmental
toxicology. Numerous papers on toxicology and pharmacology in C. elegans have been …

Natural genetic variation drives microbiome selection in the Caenorhabditis elegans gut

F Zhang, JL Weckhorst, A Assié, C Hosea, CA Ayoub… - Current Biology, 2021 - cell.com
Host genetic landscapes can shape microbiome assembly in the animal gut by contributing
to the establishment of distinct physiological environments. However, the genetic …

Host Genetic Determinants of the Microbiome Across Animals: From Caenorhabditis elegans to Cattle

EP Ryu, ER Davenport - Annual review of animal biosciences, 2022 - annualreviews.org
Animals harbor diverse communities of microbes within their gastrointestinal tracts.
Phylogenetic relationship, diet, gut morphology, host physiology, and ecology all influence …

Naturally-associated bacteria modulate Orsay virus infection of Caenorhabditis elegans

R González, MA Félix - PLoS Pathogens, 2024 - journals.plos.org
Microbes associated with an organism can significantly modulate its susceptibility to viral
infections, but our understanding of the influence of individual microbes remains limited. The …