What are higher-order networks?

C Bick, E Gross, HA Harrington, MT Schaub - SIAM Review, 2023 - SIAM
Network-based modeling of complex systems and data using the language of graphs has
become an essential topic across a range of different disciplines. Arguably, this graph-based …

The shape of things to come: Topological data analysis and biology, from molecules to organisms

EJ Amézquita, MY Quigley, T Ophelders… - Developmental …, 2020 - Wiley Online Library
Shape is data and data is shape. Biologists are accustomed to thinking about how the shape
of biomolecules, cells, tissues, and organisms arise from the effects of genetics …

Random forest vs logistic regression: binary classification for heterogeneous datasets

K Kirasich, T Smith, B Sadler - SMU Data Science Review, 2018 - scholar.smu.edu
Selecting a learning algorithm to implement for a particular application on the basis of
performance still remains an ad-hoc process using fundamental benchmarks such as …

Topological relational learning on graphs

Y Chen, B Coskunuzer, Y Gel - Advances in neural …, 2021 - proceedings.neurips.cc
Graph neural networks (GNNs) have emerged as a powerful tool for graph classification and
representation learning. However, GNNs tend to suffer from over-smoothing problems and …

A persistent weisfeiler-lehman procedure for graph classification

B Rieck, C Bock, K Borgwardt - International Conference on …, 2019 - proceedings.mlr.press
Abstract The Weisfeiler–Lehman graph kernel exhibits competitive performance in many
graph classification tasks. However, its subtree features are not able to capture connected …

Persistent homology of complex networks for dynamic state detection

A Myers, E Munch, FA Khasawneh - Physical Review E, 2019 - APS
In this paper we develop an alternative topological data analysis (TDA) approach for
studying graph representations of time series of dynamical systems. Specifically, we show …

The Euler characteristic: A general topological descriptor for complex data

A Smith, VM Zavala - Computers & Chemical Engineering, 2021 - Elsevier
Datasets are mathematical objects (eg, point clouds, matrices, graphs, images,
fields/functions) that have shape. This shape encodes important knowledge about the …

Chatter classification in turning using machine learning and topological data analysis

FA Khasawneh, E Munch, JA Perea - IFAC-PapersOnLine, 2018 - Elsevier
Chatter identification and detection in machining processes has been an active area of
research in the past two decades. Part of the challenge in studying chatter is that machining …

Temporal network analysis using zigzag persistence

A Myers, D Muñoz, FA Khasawneh, E Munch - EPJ Data Science, 2023 - epjds.epj.org
This work presents a framework for studying temporal networks using zigzag persistence, a
tool from the field of Topological Data Analysis (TDA). The resulting approach is general and …

Learning slosh dynamics by means of data

B Moya, D González, I Alfaro, F Chinesta… - Computational …, 2019 - Springer
In this work we study several learning strategies for fluid sloshing problems based on data.
In essence, a reduced-order model of the dynamics of the free surface motion of the fluid is …