Alternative splicing at the intersection of biological timing, development, and stress responses
D Staiger, JWS Brown - The Plant Cell, 2013 - academic.oup.com
High-throughput sequencing for transcript profiling in plants has revealed that alternative
splicing (AS) affects a much higher proportion of the transcriptome than was previously …
splicing (AS) affects a much higher proportion of the transcriptome than was previously …
Mechanism and regulation of the nonsense-mediated decay pathway
N Hug, D Longman, JF Cáceres - Nucleic acids research, 2016 - academic.oup.com
The Nonsense-mediated mRNA decay (NMD) pathway selectively degrades mRNAs
harboring premature termination codons (PTCs) but also regulates the abundance of a large …
harboring premature termination codons (PTCs) but also regulates the abundance of a large …
A physical, genetic and functional sequence assembly of the barley genome.
Barley (Hordeum vulgare L.) is among the world's earliest domesticated and most important
crop plants. It is diploid with a large haploid genome of 5.1 gigabases (Gb). Here we present …
crop plants. It is diploid with a large haploid genome of 5.1 gigabases (Gb). Here we present …
Nonsense-Mediated Decay of Alternative Precursor mRNA Splicing Variants Is a Major Determinant of the Arabidopsis Steady State Transcriptome
G Drechsel, A Kahles, AK Kesarwani, E Stauffer… - The Plant …, 2013 - academic.oup.com
The nonsense-mediated decay (NMD) surveillance pathway can recognize erroneous
transcripts and physiological mRNAs, such as precursor mRNA alternative splicing (AS) …
transcripts and physiological mRNAs, such as precursor mRNA alternative splicing (AS) …
To die or not to die? Lessons from lesion mimic mutants
Q Bruggeman, C Raynaud, M Benhamed… - Frontiers in plant …, 2015 - frontiersin.org
Programmed cell death (PCD) is a ubiquitous genetically regulated process consisting in an
activation of finely controlled signaling pathways that lead to cellular suicide. Although some …
activation of finely controlled signaling pathways that lead to cellular suicide. Although some …
Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs
Recruitment of the UPF1 nonsense-mediated mRNA decay (NMD) factor to target mRNAs
was initially proposed to occur through interaction with release factors at terminating …
was initially proposed to occur through interaction with release factors at terminating …
Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis
SA Filichkin, JS Cumbie, P Dharmawardhana… - Molecular plant, 2015 - cell.com
Environmental stresses profoundly altered accumulation of nonsense mRNAs including
intron-retaining (IR) transcripts in Arabidopsis. Temporal patterns of stress-induced IR …
intron-retaining (IR) transcripts in Arabidopsis. Temporal patterns of stress-induced IR …
Nonsense-mediated mRNA decay modulates immune receptor levels to regulate plant antibacterial defense
J Gloggnitzer, S Akimcheva, A Srinivasan, B Kusenda… - Cell host & …, 2014 - cell.com
Nonsense-mediated mRNA decay (NMD) is a conserved eukaryotic RNA surveillance
mechanism that degrades aberrant mRNAs. NMD impairment in Arabidopsis is linked to …
mechanism that degrades aberrant mRNAs. NMD impairment in Arabidopsis is linked to …
Meiotic exit in Arabidopsis is driven by P-body–mediated inhibition of translation
A Cairo, A Vargova, N Shukla, C Capitao, P Mikulkova… - Science, 2022 - science.org
Meiosis, at the transition between diploid and haploid life cycle phases, is accompanied by
reprograming of cell division machinery and followed by a transition back to mitosis. We …
reprograming of cell division machinery and followed by a transition back to mitosis. We …
Transcript‐level expression control of plant NLR genes
Y Lai, T Eulgem - Molecular plant pathology, 2018 - Wiley Online Library
Plant NLR genes encode sensitive immune receptors that can mediate the specific
recognition of pathogen avirulence effectors and activate a strong defence response, termed …
recognition of pathogen avirulence effectors and activate a strong defence response, termed …