[HTML][HTML] Space in systems biology of signaling pathways–towards intracellular molecular crowding in silico
K Takahashi, SNV Arjunan, M Tomita - FEBS letters, 2005 - Elsevier
How cells utilize intracellular spatial features to optimize their signaling characteristics is still
not clearly understood. The physical distance between the cell-surface receptor and the …
not clearly understood. The physical distance between the cell-surface receptor and the …
Distributed cell biology simulations with E-Cell system
M Sugimoto, K Takahashi, T Kitayama, D Ito… - Grid Computing in Life …, 2005 - Springer
Many useful applications of simulation in computational cell biology, eg kinetic parameter
estimation, Metabolic Control Analysis (MCA), and bifurcation analysis, require a large …
estimation, Metabolic Control Analysis (MCA), and bifurcation analysis, require a large …
E-CELL system version 3: a software platform for integrative computational biology
K Takahashi, T Sakurada, K Kaizu, T Kitayama… - Genome …, 2003 - jstage.jst.go.jp
E-CELL System is an OpenSource software environment for modeling, simulation and
mathematical analysis of the cell (http://www. e-cell. org/software). Unlike its preceding …
mathematical analysis of the cell (http://www. e-cell. org/software). Unlike its preceding …
[PDF][PDF] Multi-algorithm and multi-timescale cell biology simulation
K Takahashi - PhD, Keio University, Fujisawa, Japan, 2004 - sfc.keio.ac.jp
Computational cell biology is a relatively new branch of computational sciences which sets
computer simulation, as well as molecular biology, biochemistry and biophysics, at the …
computer simulation, as well as molecular biology, biochemistry and biophysics, at the …
A distributed-based stochastic simulation algorithm for large biochemical reaction networks
J Niu, H Zheng, J Chen, M Ma… - 2007 1st International …, 2007 - ieeexplore.ieee.org
Dynamic modeling and simulation of biochemical reaction networks is an important topic in
systems biology and is obtaining growing attention from researchers with computational and …
systems biology and is obtaining growing attention from researchers with computational and …
[图书][B] Accelerating exact stochastic simulation of biochemical systems
JM McCollum - 2006 - search.proquest.com
The ability to accurately and efficiently simulate computer models of biochemical systems is
of growing importance to the molecular biology and pharmaceutical research communities …
of growing importance to the molecular biology and pharmaceutical research communities …
[引用][C] Distributed Cell Biology Simulations with E-Cell System
D Ito, M Tomita - Grid computing in life science: first International …, 2005 - Springer Verlag