An introduction to the analysis of single-cell RNA-sequencing data

AA AlJanahi, M Danielsen, CE Dunbar - Molecular Therapy Methods & …, 2018 - cell.com
The recent development of single-cell RNA sequencing has deepened our understanding of
the cell as a functional unit, providing new insights based on gene expression profiles of …

Landscape of X chromosome inactivation across human tissues

T Tukiainen, AC Villani, A Yen, MA Rivas, JL Marshall… - Nature, 2017 - nature.com
X chromosome inactivation (XCI) silences transcription from one of the two X chromosomes
in female mammalian cells to balance expression dosage between XX females and XY …

Compensation of gene dosage on the mammalian X

D Cecalev, B Viçoso, R Galupa - Development, 2024 - journals.biologists.com
Changes in gene dosage can have tremendous evolutionary potential (eg whole-genome
duplications), but without compensatory mechanisms, they can also lead to gene …

Elastic dosage compensation by X-chromosome upregulation

A Lentini, H Cheng, JC Noble, N Papanicolaou… - Nature …, 2022 - nature.com
X-chromosome inactivation and X-upregulation are the fundamental modes of chromosome-
wide gene regulation that collectively achieve dosage compensation in mammals, but the …

Incomplete transcriptional dosage compensation of chicken and platypus sex chromosomes is balanced by post-transcriptional compensation

NC Lister, AM Milton, HR Patel, SA Waters… - Proceedings of the …, 2024 - pnas.org
Heteromorphic sex chromosomes (XY or ZW) present problems of gene dosage imbalance
between sexes and with autosomes. A need for dosage compensation has long been …

Cutting edge: CXCR3 escapes X chromosome inactivation in T cells during infection: potential implications for sex differences in immune responses

S Oghumu, S Varikuti, JC Stock, G Volpedo… - The Journal of …, 2019 - journals.aai.org
CXCR3, an X-linked gene, is subject to X chromosome inactivation (XCI), but it is unclear
whether CXCR3 escapes XCI in immune cells. We determined whether CXCR3 escapes …

Sex differences in susceptibility to substance use disorder: Role for X chromosome inactivation and escape?

K Krueger, F Lamenza, H Gu, H El-Hodiri… - Molecular and Cellular …, 2023 - Elsevier
There is a sex-based disparity associated with substance use disorders (SUDs) as
demonstrated by clinical and preclinical studies. Females are known to escalate from initial …

X-chromosome upregulation is driven by increased burst frequency

AJM Larsson, C Coucoravas, R Sandberg… - Nature Structural & …, 2019 - nature.com
Ohno's hypothesis postulates that upregulation of X-linked genes rectifies their dosage
imbalance relative to autosomal genes, which are present in two active copies per cell. Here …

New insights into X-chromosome reactivation during reprogramming to pluripotency

A Panda, JJ Zylicz, V Pasque - Cells, 2020 - mdpi.com
Dosage compensation between the sexes results in one X chromosome being inactivated
during female mammalian development. Chromosome-wide transcriptional silencing from …

Lineage-specific dynamics of loss of X upregulation during inactive-X reactivation

HC Naik, D Chandel, S Majumdar, M Arava, R Baro… - Stem Cell Reports, 2024 - cell.com
In mammals, X chromosome dosage is balanced between sexes through the silencing of
one X chromosome in females. Recent single-cell RNA sequencing analysis demonstrated …