Evolution of coastal forests based on a full set of mangrove genomes

Z He, X Feng, Q Chen, L Li, S Li, K Han, Z Guo… - Nature ecology & …, 2022 - nature.com
Genomic studies are now poised to explore whole communities of species. The~ 70 species
of woody plants that anchor the coastal ecosystems of the tropics, collectively referred to as …

Evaluation of a Bayesian coalescent method of species delimitation

C Zhang, DX Zhang, T Zhu, Z Yang - Systematic biology, 2011 - academic.oup.com
A Bayesian coalescent-based method has recently been proposed to delimit species using
multilocus genetic sequence data. Posterior probabilities of different species delimitation …

Two evolutionary histories in the genome of rice: the roles of domestication genes

Z He, W Zhai, H Wen, T Tang, Y Wang, X Lu… - PLoS …, 2011 - journals.plos.org
Genealogical patterns in different genomic regions may be different due to the joint influence
of gene flow and selection. The existence of two subspecies of cultivated rice provides a …

Impact of model violations on the inference of species boundaries under the multispecies coalescent

AJ Barley, JM Brown, RC Thomson - Systematic Biology, 2018 - academic.oup.com
The use of genetic data for identifying species-level lineages across the tree of life has
received increasing attention in the field of systematics over the past decade. The …

Phylogeography of Sophora davidii (Leguminosae) across the 'Tanaka‐Kaiyong Line', an important phytogeographic boundary in Southwest China

DM Fan, JP Yue, ZL Nie, ZM Li, HP Comes… - Molecular …, 2013 - Wiley Online Library
Abstract The 'Tanaka‐Kaiyong Line'(TKL) is a major phytogeographic boundary in
Southwest China, separating East Asia's Sino‐Himalayan and Sino‐Japanese Floras …

Testing comparative phylogeographic models of marine vicariance and dispersal using a hierarchical Bayesian approach

MJ Hickerson, CP Meyer - BMC evolutionary biology, 2008 - Springer
Background Marine allopatric speciation is an enigma because pelagic larval dispersal can
potentially connect disjunct populations thereby preventing reproductive and morphological …

Maximum likelihood implementation of an isolation-with-migration model for three species

DA Dalquen, T Zhu, Z Yang - Systematic Biology, 2017 - academic.oup.com
We develop a maximum likelihood (ML) method for estimating migration rates between
species using genomic sequence data. A species tree is used to accommodate the …

Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact

P Gladieux, E Vercken, MC Fontaine… - Molecular Biology …, 2011 - academic.oup.com
Sympatry of species that lack complete prezygotic isolation is ideal for the study of how
species can be maintained in the face of potential gene flow. This is particularly important in …

Natural hybridization in mangroves–an overview

P Ragavan, R Zhou, WL Ng, TS Rana… - Botanical Journal of …, 2017 - academic.oup.com
Natural hybridization and its evolutionary significance in seven genera of mangrove species
is reviewed and discussed. Overlapping geographical distributions, habitats and flowering …

Pleistocene climate change and the origin of two desert plant species, Pugionium cornutum and Pugionium dolabratum (Brassicaceae), in northwest China

Q Wang, RJ Abbott, QS Yu, K Lin, JQ Liu - New Phytologist, 2013 - Wiley Online Library
P leistocene climate change has had an important effect in shaping intraspecific genetic
variation in many species; however, its role in driving speciation is less clear. We examined …