Epigenetic regulation of epithelial–mesenchymal transition

L Sun, J Fang - Cellular and molecular life sciences, 2016 - Springer
Epithelial–mesenchymal transition (EMT) is an essential process for morphogenesis and
organ development which reversibly enables polarized epithelial cells to lose their epithelial …

Using CellMiner 1.6 for systems pharmacology and genomic analysis of the NCI-60

WC Reinhold, M Sunshine, S Varma, JH Doroshow… - Clinical Cancer …, 2015 - AACR
The NCI-60 cancer cell line panel provides a premier model for data integration, and
systems pharmacology being the largest publicly available database of anticancer drug …

CellMiner: a relational database and query tool for the NCI-60 cancer cell lines

UT Shankavaram, S Varma, D Kane, M Sunshine… - BMC genomics, 2009 - Springer
Background Advances in the high-throughput omic technologies have made it possible to
profile cells in a large number of ways at the DNA, RNA, protein, chromosomal, functional …

Comprehensive high-throughput arrays for relative methylation (CHARM)

RA Irizarry, C Ladd-Acosta, B Carvalho, H Wu… - Genome …, 2008 - genome.cshlp.org
This study was originally conceived to test in a rigorous way the specificity of three major
approaches to high-throughput array-based DNA methylation analysis:(1) MeDIP, or …

Loss of let-7 up-regulates EZH2 in prostate cancer consistent with the acquisition of cancer stem cell signatures that are attenuated by BR-DIM

D Kong, E Heath, W Chen, ML Cher, I Powell… - PloS one, 2012 - journals.plos.org
The emergence of castrate-resistant prostate cancer (CRPC) contributes to the high mortality
of patients diagnosed with prostate cancer (PCa), which in part could be attributed to the …

Mechanisms and sequelae of E‐cadherin silencing in hereditary diffuse gastric cancer

M Barber, A Murrell, Y Ito, AT Maia… - The Journal of …, 2008 - Wiley Online Library
Abstract Around 25–40% of cases of hereditary diffuse gastric cancer (HDGC) are caused by
heterozygous E‐cadherin (CDH1) germline mutations. The mechanisms for loss of the …

Epigenetic repression of E-cadherin by human papillomavirus 16 E7 protein

J Laurson, S Khan, R Chung, K Cross, K Raj - Carcinogenesis, 2010 - academic.oup.com
A common feature shared between several human cancer-associated viruses, such as
Epstein-Barr virus, Hepatitis B virus and Hepatitis C virus, and Human papillomavirus (HPV) …

Sensitive Melting Analysis after Real Time-Methylation Specific PCR (SMART-MSP): high-throughput and probe-free quantitative DNA methylation detection

LS Kristensen, T Mikeska, M Krypuy… - Nucleic acids …, 2008 - academic.oup.com
DNA methylation changes that are recurrent in cancer have generated great interest as
potential biomarkers for the early detection and monitoring of cancer. In such situations …

DNA fingerprinting of the NCI-60 cell line panel

PL Lorenzi, WC Reinhold, S Varma… - Molecular cancer …, 2009 - AACR
Abstract The National Cancer Institute's NCI-60 cell line panel, the most extensively
characterized set of cells in existence and a public resource, is frequently used as a …

Methyl‐H3K9‐binding protein MPP8 mediates E‐cadherin gene silencing and promotes tumour cell motility and invasion

K Kokura, L Sun, MT Bedford, J Fang - The EMBO journal, 2010 - embopress.org
H3K9 methylation has been linked to a variety of biological processes including position‐
effect variegation, heterochromatin formation and transcriptional regulation. To further …