Using big data and mobile health to manage diarrhoeal disease in children in low-income and middle-income countries: societal barriers and ethical implications

KH Keddy, S Saha, S Kariuki, JB Kalule… - The Lancet Infectious …, 2022 - thelancet.com
Diarrhoea is an important cause of morbidity and mortality in children from low-income and
middle-income countries (LMICs), despite advances in the management of this condition …

The Stanford Medicine data science ecosystem for clinical and translational research

A Callahan, E Ashley, S Datta, P Desai, TA Ferris… - JAMIA …, 2023 - academic.oup.com
Objective To describe the infrastructure, tools, and services developed at Stanford Medicine
to maintain its data science ecosystem and research patient data repository for clinical and …

Decoding the genomics of abdominal aortic aneurysm

J Li, C Pan, S Zhang, JM Spin, A Deng, LLK Leung… - Cell, 2018 - cell.com
A key aspect of genomic medicine is to make individualized clinical decisions from personal
genomes. We developed a machine-learning framework to integrate personal genomes and …

Big data, artificial intelligence, and cardiovascular precision medicine

C Krittanawong, KW Johnson… - Expert Review of …, 2018 - Taylor & Francis
ABSTRACT Introduction: Cardiovascular diseases (CVDs) are chronic, heterogeneous
diseases which are generally classified according to clinical presentation. However, the …

Transfer learning enables prediction of CYP2D6 haplotype function

G McInnes, R Dalton, K Sangkuhl… - PLoS Computational …, 2020 - journals.plos.org
Cytochrome P450 2D6 (CYP2D6) is a highly polymorphic gene whose protein product
metabolizes more than 20% of clinically used drugs. Genetic variations in CYP2D6 are …

Scalability and cost-effectiveness analysis of whole genome-wide association studies on Google Cloud Platform and Amazon Web Services

I Krissaane, C De Niz… - Journal of the …, 2020 - academic.oup.com
Objective Advancements in human genomics have generated a surge of available data,
fueling the growth and accessibility of databases for more comprehensive, in-depth genetic …

BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network

KACS Ocaña, M Galheigo, C Osthoff… - Future Generation …, 2020 - Elsevier
Science gateways have gained increasing attention in the last years from diverse
communities. Science gateways are software solutions that bring out the integration of …

KAUST Metagenomic Analysis Platform (KMAP), enabling access to massive analytics of re-annotated metagenomic data

I Alam, AA Kamau, DK Ngugi, T Gojobori, CM Duarte… - Scientific reports, 2021 - nature.com
Exponential rise of metagenomics sequencing is delivering massive functional
environmental genomics data. However, this also generates a procedural bottleneck for on …

[HTML][HTML] Swarm: A federated cloud framework for large-scale variant analysis

A Bahmani, K Ferriter, V Krishnan, A Alavi… - PLoS computational …, 2021 - journals.plos.org
Genomic data analysis across multiple cloud platforms is an ongoing challenge, especially
when large amounts of data are involved. Here, we present Swarm, a framework for …

Flowviz: Framework for phylogenetic processing

M Luis, C Vaz - arXiv preprint arXiv:2211.15282, 2022 - arxiv.org
The increasing risk of epidemics and a fast-growing world population has contributed to a
great investment in phylogenetic analysis, in order to track numerous diseases and conceive …