Machine learning approaches and databases for prediction of drug–target interaction: a survey paper

M Bagherian, E Sabeti, K Wang… - Briefings in …, 2021 - academic.oup.com
The task of predicting the interactions between drugs and targets plays a key role in the
process of drug discovery. There is a need to develop novel and efficient prediction …

Applications of Connectivity Map in drug discovery and development

XA Qu, DK Rajpal - Drug discovery today, 2012 - Elsevier
Genome-wide expression profiling of gene transcripts has been successfully applied in
biomedical discovery for over a decade. Based on the premises of this technology …

Prediction of drug-target interactions and drug repositioning via network-based inference

F Cheng, C Liu, J Jiang, W Lu, W Li, G Liu… - PLoS computational …, 2012 - journals.plos.org
Drug-target interaction (DTI) is the basis of drug discovery and design. It is time consuming
and costly to determine DTI experimentally. Hence, it is necessary to develop computational …

Systematic drug repositioning based on clinical side-effects

L Yang, P Agarwal - PloS one, 2011 - journals.plos.org
Drug repositioning helps fully explore indications for marketed drugs and clinical
candidates. Here we show that the clinical side-effects (SEs) provide a human phenotypic …

Drug repositioning for orphan diseases

D Sardana, C Zhu, M Zhang… - Briefings in …, 2011 - academic.oup.com
The need and opportunity to discover therapeutics for rare or orphan diseases are
enormous. Due to limited prevalence and/or commercial potential, of the approximately …

Docking-based inverse virtual screening: methods, applications, and challenges

X Xu, M Huang, X Zou - Biophysics reports, 2018 - Springer
Identifying potential protein targets for a small-compound ligand query is crucial to the
process of drug development. However, there are tens of thousands of proteins in human …

Chemo-and bioinformatics resources for in silico drug discovery from medicinal plants beyond their traditional use: a critical review

AA Lagunin, RK Goel, DY Gawande, P Pahwa… - Natural product …, 2014 - pubs.rsc.org
Covering: up to 2014 In silico approaches have been widely recognised to be useful for drug
discovery. Here, we consider the significance of available databases of medicinal plants and …

DRAR-CPI: a server for identifying drug repositioning potential and adverse drug reactions via the chemical–protein interactome

H Luo, J Chen, L Shi, M Mikailov, H Zhu… - Nucleic acids …, 2011 - academic.oup.com
Identifying new indications for existing drugs (drug repositioning) is an efficient way of
maximizing their potential. Adverse drug reaction (ADR) is one of the leading causes of …

Assessing drug target association using semantic linked data

B Chen, Y Ding, DJ Wild - PLoS computational biology, 2012 - journals.plos.org
The rapidly increasing amount of public data in chemistry and biology provides new
opportunities for large-scale data mining for drug discovery. Systematic integration of these …

Modality-DTA: multimodality fusion strategy for drug–target affinity prediction

X Yang, Z Niu, Y Liu, B Song, W Lu… - … /ACM Transactions on …, 2022 - ieeexplore.ieee.org
Prediction of the drug–target affinity (DTA) plays an important role in drug discovery. Existing
deep learning methods for DTA prediction typically leverage a single modality, namely …