[PDF][PDF] The folding of single domain proteins-have we reached a consensus?

TR Sosnick - Biophysical Journal, 2011 - cell.com
The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. This talk will provide
an overview of new approaches to study and manipulate signaling in living cells and …

How fast-folding proteins fold

K Lindorff-Larsen, S Piana, RO Dror, DE Shaw - Science, 2011 - science.org
An outstanding challenge in the field of molecular biology has been to understand the
process by which proteins fold into their characteristic three-dimensional structures. Here …

Water as a good solvent for unfolded proteins: Folding and collapse are fundamentally different

PL Clark, KW Plaxco, TR Sosnick - Journal of molecular biology, 2020 - Elsevier
The argument that the hydrophobic effect is the primary effect driving the folding of globular
proteins is nearly universally accepted (including by the authors). But does this view also …

Competition between native topology and nonnative interactions in simple and complex folding kinetics of natural and designed proteins

Z Zhang, HS Chan - … of the National Academy of Sciences, 2010 - National Acad Sciences
We compared folding properties of designed protein Top7 and natural protein S6 by using
coarse-grained chain models with a mainly native-centric construct that accounted also for …

Collapse and Protein Folding: Should We Be Surprised that Biothermodynamics Works So Well?

TR Sosnick, MC Baxa - Annual Review of Biophysics, 2024 - annualreviews.org
A complete understanding of protein function and dynamics requires the characterization of
the multiple thermodynamic states, including the denatured state ensemble (DSE). Whereas …

Tracking multiple genomic elements using correlative CRISPR imaging and sequential DNA FISH

J Guan, H Liu, X Shi, S Feng, B Huang - Biophysical journal, 2017 - cell.com
Live imaging of genome has offered important insights into the dynamics of the genome
organization and gene expression. The demand to image simultaneously multiple genomic …

From propensities to patterns to principles in protein folding

GD Rose - Proteins: Structure, Function, and Bioinformatics, 2025 - Wiley Online Library
As proposed here, β‐turns play an essential role in protein self‐assembly. This compact,
four‐residue motif affects protein conformation dramatically by reversing the overall chain …

Protein contacts, inter-residue interactions and side-chain modelling

G Faure, A Bornot, AG de Brevern - Biochimie, 2008 - Elsevier
Three-dimensional structures of proteins are the support of their biological functions. Their
folds are stabilized by contacts between residues. Inner protein contacts are generally …

High pressure ZZ-exchange NMR reveals key features of protein folding transition states

Y Zhang, S Kitazawa, I Peran, N Stenzoski… - Journal of the …, 2016 - ACS Publications
Understanding protein folding mechanisms and their sequence dependence requires the
determination of residue-specific apparent kinetic rate constants for the folding and …

What have we learned from the studies of two-state folders, and what are the unanswered questions about two-state protein folding?

D Barrick - Physical biology, 2009 - iopscience.iop.org
Small proteins with globular structures often fold by simple all-or-none mechanisms, both in
an equilibrium and a kinetic sense, despite the very large number of partly folded …