Molecular modelling of the thermophysical properties of fluids: Expectations, limitations, gaps and opportunities

MJ Tillotson, NI Diamantonis, C Buda… - Physical Chemistry …, 2023 - pubs.rsc.org
This manuscript provides an overview of the current state of the art in terms of the molecular
modelling of the thermophysical properties of fluids. It is intended to manage the …

An imbalance in the force: the need for standardized benchmarks for molecular simulation

K Kriz, L Schmidt, AT Andersson, MM Walz… - Journal of Chemical …, 2023 - ACS Publications
Force fields (FFs) for molecular simulation have been under development for more than half
a century. As with any predictive model, rigorous testing and comparisons of models …

OPLS/2020 Force Field for Unsaturated Hydrocarbons, Alcohols, and Ethers

WL Jorgensen, MM Ghahremanpour… - The Journal of …, 2023 - ACS Publications
The OPLS all-atom force field was updated and applied to modeling unsaturated
hydrocarbons, alcohols, and ethers. Testing has included gas-phase conformational …

Tensor Train Optimization for Conformational Sampling of Organic Molecules

C Zurek, RA Mallaev, AC Paul… - Journal of Chemical …, 2024 - ACS Publications
Exploring the conformational space of molecules remains a challenge of fundamental
importance to quantum chemistry: identification of relevant conformers at ambient conditions …

Development and comprehensive benchmark of a high-quality amber-consistent small molecule force field with broad chemical space coverage for molecular …

B Xue, Q Yang, Q Zhang, X Wan, D Fang… - Journal of Chemical …, 2023 - ACS Publications
Biomolecular simulations have become an essential tool in contemporary drug discovery,
and molecular mechanics force fields (FFs) constitute its cornerstone. Developing a high …

Resolving host-guest interactions between pillararenes and homoserine lactones to restrain bacterial quorum sensing

OIV Luotonen, E Osmekhina, E Anaya-Plaza… - Cell Reports Physical …, 2024 - cell.com
Using supramolecular host molecules to hinder bacterial quorum sensing (QS) is a potential
approach in circumventing antimicrobial resistance (AMR). The emergent family of …

[图书][B] Annual reports in computational chemistry

DA Dixon - 2015 - books.google.com
Annual Reports in Computational Chemistry provides timely and critical reviews of important
topics in computational chemistry as applied to all chemical disciplines. Topics covered …

Atomistic-Continuum theory of graphene fracture for opening mode crack

K Huang, J Wu, Y Yin, W Xu - International Journal of Solids and Structures, 2023 - Elsevier
Although atomic calculations and experiments have demonstrated that the fracture of
graphene and single-walled carbon nanotubes (SWCNTs) is brittle, it is still an open …

Accurate quantum-centric simulations of supramolecular interactions

D Kaliakin, A Shajan, JR Moreno, Z Li, A Mitra… - arXiv preprint arXiv …, 2024 - arxiv.org
We present the first quantum-centric simulations of noncovalent interactions using a
supramolecular approach. We simulate the potential energy surfaces (PES) of the water and …

Monte Carlo simulations for free energies of hydration: Past to present

WL Jorgensen - The Journal of Chemical Physics, 2024 - pubs.aip.org
A summary of the development of Monte Carlo statistical mechanics simulations for the
computation of free energies of hydration of organic molecules is followed by presentation of …