Exploring tissue architecture using spatial transcriptomics

A Rao, D Barkley, GS França, I Yanai - Nature, 2021 - nature.com
Deciphering the principles and mechanisms by which gene activity orchestrates complex
cellular arrangements in multicellular organisms has far-reaching implications for research …

Single-cell RNA sequencing in cardiovascular development, disease and medicine

DT Paik, S Cho, L Tian, HY Chang… - Nature Reviews Cardiology, 2020 - nature.com
Advances in single-cell RNA sequencing (scRNA-seq) technologies in the past 10 years
have had a transformative effect on biomedical research, enabling the profiling and analysis …

Spatially resolved clonal copy number alterations in benign and malignant tissue

A Erickson, M He, E Berglund, M Marklund… - Nature, 2022 - nature.com
Defining the transition from benign to malignant tissue is fundamental to improving early
diagnosis of cancer. Here we use a systematic approach to study spatial genome integrity in …

Spatial deconvolution of HER2-positive breast cancer delineates tumor-associated cell type interactions

A Andersson, L Larsson, L Stenbeck, F Salmén… - Nature …, 2021 - nature.com
In the past decades, transcriptomic studies have revolutionized cancer treatment and
diagnosis. However, tumor sequencing strategies typically result in loss of spatial …

[HTML][HTML] Multimodal analysis of composition and spatial architecture in human squamous cell carcinoma

AL Ji, AJ Rubin, K Thrane, S Jiang, DL Reynolds… - Cell, 2020 - cell.com
To define the cellular composition and architecture of cutaneous squamous cell carcinoma
(cSCC), we combined single-cell RNA sequencing with spatial transcriptomics and …

High-definition spatial transcriptomics for in situ tissue profiling

S Vickovic, G Eraslan, F Salmén, J Klughammer… - Nature …, 2019 - nature.com
Spatial and molecular characteristics determine tissue function, yet high-resolution methods
to capture both concurrently are lacking. Here, we developed high-definition spatial …

Identification of early neurodegenerative pathways in progressive multiple sclerosis

M Kaufmann, AL Schaupp, R Sun, F Coscia… - Nature …, 2022 - nature.com
Progressive multiple sclerosis (MS) is characterized by unrelenting neurodegeneration,
which causes cumulative disability and is refractory to current treatments. Drug development …

[HTML][HTML] A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart

M Asp, S Giacomello, L Larsson, C Wu, D Fürth, X Qian… - Cell, 2019 - cell.com
The process of cardiac morphogenesis in humans is incompletely understood. Its full
characterization requires a deep exploration of the organ-wide orchestration of gene …

Molecular atlas of the adult mouse brain

C Ortiz, JF Navarro, A Jurek, A Märtin, J Lundeberg… - Science …, 2020 - science.org
Brain maps are essential for integrating information and interpreting the structure-function
relationship of circuits and behavior. We aimed to generate a systematic classification of the …

Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the mouse liver

F Hildebrandt, A Andersson, S Saarenpää… - Nature …, 2021 - nature.com
Reconstruction of heterogeneity through single cell transcriptional profiling has greatly
advanced our understanding of the spatial liver transcriptome in recent years. However …