Capturing single‐copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in …

BB Liu, ZY Ma, C Ren, RGJ Hodel… - … of Systematics and …, 2021 - Wiley Online Library
With the decreasing cost and availability of many newly developed bioinformatics pipelines,
next‐generation sequencing (NGS) has revolutionized plant systematics in recent years …

Settling a family feud: A high‐level phylogenomic framework for the Gentianales based on 353 nuclear genes and partial plastomes

A Antonelli, JJ Clarkson, K Kainulainen… - American Journal of …, 2021 - Wiley Online Library
Premise Comprising five families that vastly differ in species richness—ranging from
Gelsemiaceae with 13 species to the Rubiaceae with 13,775 species—members of the …

Phylogenomic conflict analyses of the plastid and mitochondrial genomes via deep genome skimming highlight their independent evolutionary histories: A case study …

TT Xue, SB Janssens, BB Liu, SX Yu - Molecular Phylogenetics and …, 2024 - Elsevier
Phylogenomic conflicts are widespread among genomic data, with most previous studies
primarily focusing on nuclear datasets instead of organellar genomes. In this study, we …

[图书][B] Flowering plants. Eudicots

JW Kadereit, C Jeffrey - 2018 - Springer
It is with great pleasure that I present a volume with family treatments of the orders Apiales
and Gentianales (except Rubiaceae). An immense amount of evidence recently accrued …

[HTML][HTML] Structural and gene composition variation of the complete mitochondrial genome of Mammillaria huitzilopochtli (Cactaceae, Caryophyllales), revealed by de …

D Cruz Plancarte, S Solórzano - BMC genomics, 2023 - Springer
Background Structural descriptions of complete genomes have elucidated evolutionary
processes in angiosperms. In Cactaceae (Caryophyllales), a high structural diversity of the …

Conflicting phylogenetic signals in genomic data of the coffee family (Rubiaceae)

N Wikström, B Bremer, C Rydin - Journal of Systematics and …, 2020 - Wiley Online Library
Reconstructions of phylogenetic relationships in the flowering plant family Rubiaceae have
up until now relied heavily on single‐or multi‐gene data, primarily from the plastid …

[图书][B] Phylonyms: a companion to the PhyloCode

K de Queiroz, P Cantino, J Gauthier - 2020 - taylorfrancis.com
Phylonyms is an implementation of PhyloCode, which is a set of principles, rules, and
recommendations governing phylogenetic nomenclature. Nearly 300 clades-lineages of …

[HTML][HTML] Herbarium-based science in the twenty-first century

G Besnard, M Gaudeul, S Lavergne, S Muller… - Botany …, 2018 - Taylor & Francis
Herbarium collections are natural history collections and as such, are repositories of plant
biodiversity and have been central to botanical knowledge for over four centuries. The Index …

Comprehensive analysis of complete mitochondrial genome of Sapindus mukorossi Gaertn.: an important industrial oil tree species in China

X Wang, R Zhang, Q Yun, Y Xu, G Zhao, J Liu… - Industrial Crops and …, 2021 - Elsevier
Sapindus mukorossi is a species of great value in the oil, cosmetic and pharmaceutical
industries. However, there have been little progress in industrialization development of S …

[HTML][HTML] Target capture data resolve recalcitrant relationships in the coffee family (Rubioideae, Rubiaceae)

O Thureborn, SG Razafimandimbison… - Frontiers in Plant …, 2022 - frontiersin.org
Subfamily Rubioideae is the largest of the main lineages in the coffee family (Rubiaceae),
with over 8,000 species and 29 tribes. Phylogenetic relationships among tribes and other …