Sequencing pools of individuals—mining genome-wide polymorphism data without big funding

C Schlötterer, R Tobler, R Kofler, V Nolte - Nature Reviews Genetics, 2014 - nature.com
The analysis of polymorphism data is becoming increasingly important as a complementary
tool to classical genetic analyses. Nevertheless, despite plunging sequencing costs …

Population‐level inferences from environmental DNA—Current status and future perspectives

EE Sigsgaard, MR Jensen… - Evolutionary …, 2020 - Wiley Online Library
Environmental DNA (eDNA) extracted from water samples has recently shown potential as a
valuable source of population genetic information for aquatic macroorganisms. This …

Stacks: an analysis tool set for population genomics

J Catchen, PA Hohenlohe, S Bassham… - Molecular …, 2013 - Wiley Online Library
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …

Nuclear eDNA estimates population allele frequencies and abundance in experimental mesocosms and field samples

KJ Andres, SA Sethi, DM Lodge, J Andrés - Molecular Ecology, 2021 - Wiley Online Library
Advances in environmental DNA (eDNA) methodologies have led to improvements in the
ability to detect species and communities in aquatic environments, yet the majority of studies …

Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA …

M Kapun, MG Barrón, F Staubach… - Molecular Biology …, 2020 - academic.oup.com
Genetic variation is the fuel of evolution, with standing genetic variation especially important
for short-term evolution and local adaptation. To date, studies of spatiotemporal patterns of …

Population genomics from pool sequencing

L Ferretti, SE Ramos‐Onsins… - Molecular …, 2013 - Wiley Online Library
Next generation sequencing of pooled samples is an effective approach for studies of
variability and differentiation in populations. In this paper we provide a comprehensive set of …

Detecting signatures of positive selection in non-model species using genomic data

H Weigand, F Leese - Zoological journal of the Linnean Society, 2018 - academic.oup.com
Understanding how natural selection shapes genetic variation in populations is of
paramount importance in evolutionary biology. Affordable high-throughput sequencing now …

The quail genome: insights into social behaviour, seasonal biology and infectious disease response

KM Morris, MM Hindle, S Boitard, DW Burt, AF Danner… - BMC biology, 2020 - Springer
Abstract Background The Japanese quail (Coturnix japonica) is a popular domestic poultry
species and an increasingly significant model species in avian developmental, behavioural …

Opportunities and inherent limits of using environmental DNA for population genetics

M Couton, F Viard, F Altermatt - Environmental DNA, 2023 - Wiley Online Library
Molecular techniques using DNA retrieved from community or environmental samples, in
particular environmental DNA (eDNA), are becoming increasingly popular for detecting …

Population-genetic inference from pooled-sequencing data

M Lynch, D Bost, S Wilson, T Maruki… - Genome biology and …, 2014 - academic.oup.com
Although pooled-population sequencing has become a widely used approach for estimating
allele frequencies, most work has proceeded in the absence of a proper statistical …