Exploration of ultralarge compound collections for drug discovery

WA Warr, MC Nicklaus, CA Nicolaou… - Journal of Chemical …, 2022 - ACS Publications
Designing new medicines more cheaply and quickly is tightly linked to the quest of exploring
chemical space more widely and efficiently. Chemical space is monumentally large, but …

Exploring chemical space for drug discovery using the chemical universe database

JL Reymond, M Awale - ACS chemical neuroscience, 2012 - ACS Publications
Herein we review our recent efforts in searching for bioactive ligands by enumeration and
virtual screening of the unknown chemical space of small molecules. Enumeration from first …

Stochastic voyages into uncharted chemical space produce a representative library of all possible drug-like compounds

AM Virshup, J Contreras-García, P Wipf… - Journal of the …, 2013 - ACS Publications
The “small molecule universe”(SMU), the set of all synthetically feasible organic molecules
of 500 Da molecular weight or less, is estimated to contain over 1060 structures, making …

Chemical space as a source for new drugs

JL Reymond, R Van Deursen, LC Blum… - MedChemComm, 2010 - pubs.rsc.org
The chemical space is the ensemble of all possible molecules, which is believed to contain
at least 1060 organic molecules below 500 Da of possible interest for drug discovery. This …

Understanding drug‐likeness

O Ursu, A Rayan, A Goldblum… - Wiley Interdisciplinary …, 2011 - Wiley Online Library
Abstract 'Drug‐likeness', a qualitative property of chemicals assigned by experts committee
vote, is widely integrated into the early stages of lead and drug discovery. Its conceptual …

Novel chemical space exploration via natural products

J Rosén, J Gottfries, S Muresan… - Journal of medicinal …, 2009 - ACS Publications
Natural products (NPs) are a rich source of novel compound classes and new drugs. In the
present study we have used the chemical space navigation tool ChemGPS-NP to evaluate …

Quantifying biogenic bias in screening libraries

J Hert, JJ Irwin, C Laggner, MJ Keiser… - Nature chemical …, 2009 - nature.com
In lead discovery, libraries of 106 molecules are screened for biological activity. Given the
over 1060 drug-like molecules thought possible, such screens might never succeed. The …

The enumeration of chemical space

JL Reymond, L Ruddigkeit, L Blum… - Wiley Interdisciplinary …, 2012 - Wiley Online Library
In the field of medicinal chemistry, the chemical space describes the ensemble of all organic
molecules to be considered when searching for new drugs (estimated> 1060 molecules), as …

Scaffold diversity of exemplified medicinal chemistry space

SR Langdon, N Brown, J Blagg - Journal of chemical information …, 2011 - ACS Publications
The scaffold diversity of 7 representative commercial and proprietary compound libraries is
explored for the first time using both Murcko frameworks and Scaffold Trees. We show that …

Chemoinformatics as a theoretical chemistry discipline

A Varnek, II Baskin - Molecular Informatics, 2011 - Wiley Online Library
Here, chemoinformatics is considered as a theoretical chemistry discipline complementary
to quantum chemistry and force‐field molecular modeling. These three fields are compared …