Mass spectrometry of nucleic acid noncovalent complexes

E Largy, A Konig, A Ghosh, D Ghosh… - Chemical …, 2021 - ACS Publications
Nucleic acids have been among the first targets for antitumor drugs and antibiotics. With the
unveiling of new biological roles in regulation of gene expression, specific DNA and RNA …

Integrating mass spectrometry of intact protein complexes into structural proteomics

SJ Hyung, BT Ruotolo - Proteomics, 2012 - Wiley Online Library
MS analysis of intact protein complexes has emerged as an established technology for
assessing the composition and connectivity within dynamic, heterogeneous multiprotein …

The RNA modification database, RNAMDB: 2011 update

WA Cantara, PF Crain, J Rozenski… - Nucleic acids …, 2010 - academic.oup.com
Since its inception in 1994, The RNA Modification Database (RNAMDB, http://rna-mdb. cas.
albany. edu/RNAmods/) has served as a focal point for information pertaining to naturally …

Distance restraints from crosslinking mass spectrometry: mining a molecular dynamics simulation database to evaluate lysine–lysine distances

ED Merkley, S Rysavy, A Kahraman, RP Hafen… - Protein …, 2014 - Wiley Online Library
Integrative structural biology attempts to model the structures of protein complexes that are
challenging or intractable by classical structural methods (due to size, dynamics, or …

StavroX—a software for analyzing crosslinked products in protein interaction studies

M Götze, J Pettelkau, S Schaks, K Bosse… - Journal of the …, 2011 - ACS Publications
Chemical crosslinking in combination with mass spectrometry has matured into an
alternative approach to derive low-resolution structural information of proteins and protein …

Automated assignment of MS/MS cleavable cross-links in protein 3D-structure analysis

M Götze, J Pettelkau, R Fritzsche… - Journal of the …, 2014 - ACS Publications
CID-MS/MS cleavable cross-linkers hold an enormous potential for an automated analysis of
cross-linked products, which is essential for conducting structural proteomics studies. The …

xVis: a web server for the schematic visualization and interpretation of crosslink-derived spatial restraints

M Grimm, T Zimniak, A Kahraman… - Nucleic acids …, 2015 - academic.oup.com
The identification of crosslinks by mass spectrometry has recently been established as an
integral part of the hybrid structural analysis of protein complexes and networks. The …

Optimizing the enrichment of cross‐linked products for mass spectrometric protein analysis

R Fritzsche, CH Ihling, M Götze… - … Communications in Mass …, 2012 - Wiley Online Library
RATIONALE Chemical cross‐linking in combination with a mass spectrometric analysis of
the created cross‐linked products is an area of growing interest for deriving low‐resolution …

Utilization of fast photochemical oxidation of proteins and both bottom-up and top-down mass spectrometry for structural characterization of a transcription factor …

M Polák, G Yassaghi, D Kavan, F Filandr… - Analytical …, 2022 - ACS Publications
A combination of covalent labeling techniques and mass spectrometry (MS) is currently a
progressive approach for deriving insights related to the mapping of protein surfaces or …

Top-down proteoform analysis by 2D MS with quadrupolar detection

M Polák, M Palasser, A Kádek, D Kavan… - Analytical …, 2023 - ACS Publications
Two-dimensional mass spectrometry (2D MS) is a multiplexed tandem mass spectrometry
method that does not rely on ion isolation to correlate the precursor and fragment ions. On a …