A comprehensive survey on deep graph representation learning

W Ju, Z Fang, Y Gu, Z Liu, Q Long, Z Qiao, Y Qin… - Neural Networks, 2024 - Elsevier
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …

Utilizing graph machine learning within drug discovery and development

T Gaudelet, B Day, AR Jamasb, J Soman… - Briefings in …, 2021 - academic.oup.com
Graph machine learning (GML) is receiving growing interest within the pharmaceutical and
biotechnology industries for its ability to model biomolecular structures, the functional …

Graph neural networks: foundation, frontiers and applications

L Wu, P Cui, J Pei, L Zhao, X Guo - … of the 28th ACM SIGKDD Conference …, 2022 - dl.acm.org
The field of graph neural networks (GNNs) has seen rapid and incredible strides over the
recent years. Graph neural networks, also known as deep learning on graphs, graph …

G-mixup: Graph data augmentation for graph classification

X Han, Z Jiang, N Liu, X Hu - International Conference on …, 2022 - proceedings.mlr.press
This work develops mixup for graph data. Mixup has shown superiority in improving the
generalization and robustness of neural networks by interpolating features and labels …

Decoupling the depth and scope of graph neural networks

H Zeng, M Zhang, Y Xia, A Srivastava… - Advances in …, 2021 - proceedings.neurips.cc
State-of-the-art Graph Neural Networks (GNNs) have limited scalability with respect to the
graph and model sizes. On large graphs, increasing the model depth often means …

A graph-transformer for whole slide image classification

Y Zheng, RH Gindra, EJ Green, EJ Burks… - IEEE transactions on …, 2022 - ieeexplore.ieee.org
Deep learning is a powerful tool for whole slide image (WSI) analysis. Typically, when
performing supervised deep learning, a WSI is divided into small patches, trained and the …

Machine learning on graphs: A model and comprehensive taxonomy

I Chami, S Abu-El-Haija, B Perozzi, C Ré… - Journal of Machine …, 2022 - jmlr.org
There has been a surge of recent interest in graph representation learning (GRL). GRL
methods have generally fallen into three main categories, based on the availability of …

Advances in medical image analysis with vision transformers: a comprehensive review

R Azad, A Kazerouni, M Heidari, EK Aghdam… - Medical Image …, 2023 - Elsevier
The remarkable performance of the Transformer architecture in natural language processing
has recently also triggered broad interest in Computer Vision. Among other merits …

Graph clustering with graph neural networks

A Tsitsulin, J Palowitch, B Perozzi, E Müller - Journal of Machine Learning …, 2023 - jmlr.org
Graph Neural Networks (GNNs) have achieved state-of-the-art results on many graph
analysis tasks such as node classification and link prediction. However, important …

A comprehensive survey on deep clustering: Taxonomy, challenges, and future directions

S Zhou, H Xu, Z Zheng, J Chen, J Bu, J Wu… - arXiv preprint arXiv …, 2022 - arxiv.org
Clustering is a fundamental machine learning task which has been widely studied in the
literature. Classic clustering methods follow the assumption that data are represented as …