Protein analysis by shotgun/bottom-up proteomics

Y Zhang, BR Fonslow, B Shan, MC Baek… - Chemical …, 2013 - ACS Publications
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

Quantitative mass spectrometry in proteomics: a critical review

M Bantscheff, M Schirle, G Sweetman, J Rick… - Analytical and …, 2007 - Springer
The quantification of differences between two or more physiological states of a biological
system is among the most important but also most challenging technical tasks in proteomics …

The intracellular interactome of tetraspanin-enriched microdomains reveals their function as sorting machineries toward exosomes

D Perez-Hernandez, C Gutiérrez-Vázquez… - Journal of Biological …, 2013 - ASBMB
Extracellular vesicles are emerging as a potent mechanism of intercellular communication
because they can systemically exchange genetic and protein material between cells …

The CoQH2/CoQ ratio serves as a sensor of respiratory chain efficiency

A Guaras, E Perales-Clemente, E Calvo, R Acín-Pérez… - Cell reports, 2016 - cell.com
Electrons feed into the mitochondrial electron transport chain (mETC) from NAD-or FAD-
dependent enzymes. A shift from glucose to fatty acids increases electron flux through FAD …

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

LN Mueller, MY Brusniak, DR Mani… - Journal of proteome …, 2008 - ACS Publications
Over the past decade, a series of experimental strategies for mass spectrometry based
quantitative proteomics and corresponding computational methodology for the processing of …

Advances in structure elucidation of small molecules using mass spectrometry

T Kind, O Fiehn - Bioanalytical reviews, 2010 - Springer
The structural elucidation of small molecules using mass spectrometry plays an important
role in modern life sciences and bioanalytical approaches. This review covers different soft …

Proteomics: a pragmatic perspective

P Mallick, B Kuster - Nature biotechnology, 2010 - nature.com
The evolution of mass spectrometry–based proteomic technologies has advanced our
understanding of the complex and dynamic nature of proteomes while concurrently …

Toxicogenomic approaches for understanding molecular mechanisms of heavy metal mutagenicity and carcinogenicity

P Koedrith, HL Kim, JI Weon, YR Seo - International journal of hygiene and …, 2013 - Elsevier
Heavy metals that are harmful to humans include arsenic, cadmium, chromium, lead,
mercury, and nickel. Some metals or their related compounds may even cause cancer …

Liquid chromatography-mass spectrometry-based quantitative proteomics

F Xie, T Liu, WJ Qian, VA Petyuk, RD Smith - Journal of Biological …, 2011 - ASBMB
LC-MS-based quantitative proteomics has become increasingly applied to a wide range of
biological applications due to growing capabilities for broad proteome coverage and good …

General statistical framework for quantitative proteomics by stable isotope labeling

P Navarro, M Trevisan-Herraz… - Journal of proteome …, 2014 - ACS Publications
The combination of stable isotope labeling (SIL) with mass spectrometry (MS) allows
comparison of the abundance of thousands of proteins in complex mixtures. However …