[HTML][HTML] Genomic findings and their implications for the evolutionary social sciences

BP Zietsch - Evolution and Human Behavior, 2024 - Elsevier
What past selection pressures have shaped human traits and their variation and covariation
across individuals? These are key questions in the evolutionary social sciences. Recent …

Estimating temporally variable selection intensity from ancient DNA data

Z He, X Dai, W Lyu, M Beaumont… - Molecular Biology and …, 2023 - academic.oup.com
Novel technologies for recovering DNA information from archaeological and historical
specimens have made available an ever-increasing amount of temporally spaced genetic …

Allele frequency divergence reveals ubiquitous influence of positive selection in Drosophila

J Bertram - PLoS Genetics, 2021 - journals.plos.org
Resolving the role of natural selection is a basic objective of evolutionary biology. It is
generally difficult to detect the influence of selection because ubiquitous non-selective …

Detecting and quantifying natural selection at two linked loci from time series data of allele frequencies with forward-in-time simulations

Z He, X Dai, M Beaumont, F Yu - Genetics, 2020 - academic.oup.com
Recent advances in DNA sequencing techniques have made it possible to monitor genomes
in great detail over time. This improvement provides an opportunity for us to study natural …

diplo-locus: A lightweight toolkit for inference and simulation of time-series genetic data under general diploid selection

X Cheng, M Steinrücken - bioRxiv, 2024 - pmc.ncbi.nlm.nih.gov
Whole-genome time-series allele frequency data are becoming more prevalent as ancient
DNA (aDNA) sequences and data from evolve-and-resequence (E&R) experiments are …

Estimating temporally variable selection intensity from ancient DNA data with the flexibility of modelling linkage and epistasis

Z He, X Dai, W Lyu, M Beaumont… - Molecular Ecology …, 2023 - Wiley Online Library
Innovations in ancient DNA (aDNA) preparation and sequencing technologies have
exponentially increased the quality and quantity of aDNA data extracted from ancient …

Inferring the timing and strength of natural selection and gene migration in the evolution of chicken from ancient DNA data

W Lyu, X Dai, M Beaumont, F Yu… - Molecular Ecology …, 2022 - Wiley Online Library
With the rapid growth of the number of sequenced ancient genomes, there has been
increasing interest in using this new information to study past and present adaptation. Such …

Numerical simulation of the two-locus Wright-Fisher stochastic differential equation with application to approximating transition probability densities

Z He, M Beaumont, F Yu - bioRxiv, 2020 - biorxiv.org
Over the past decade there has been an increasing focus on the application of the Wright-
Fisher diffusion to the inference of natural selection from genetic time series. A key …

Estimating temporally variable selection intensity from ancient DNA data II

W Lyu, X Dai, M Beaumont, F Yu, Z He - bioRxiv, 2023 - biorxiv.org
Recent technological innovations, such as next generation sequencing and DNA
hybridisation enrichment, have made it possible to recover DNA information from historical …

Convergence of likelihood ratios and estimators for selection in nonneutral Wright–Fisher diffusions

J Sant, P A. Jenkins, J Koskela… - Scandinavian Journal of …, 2022 - Wiley Online Library
A number of discrete time, finite population size models in genetics describing the dynamics
of allele frequencies are known to converge (subject to suitable scaling) to a diffusion …