The genetics of transcription factor DNA binding variation

B Deplancke, D Alpern, V Gardeux - Cell, 2016 - cell.com
Most complex trait-associated variants are located in non-coding regulatory regions of the
genome, where they have been shown to disrupt transcription factor (TF)-DNA binding …

Absence of a simple code: how transcription factors read the genome

M Slattery, T Zhou, L Yang, ACD Machado… - Trends in biochemical …, 2014 - cell.com
Transcription factors (TFs) influence cell fate by interpreting the regulatory DNA within a
genome. TFs recognize DNA in a specific manner; the mechanisms underlying this …

Advances in targeted proteomics and applications to biomedical research

T Shi, E Song, S Nie, KD Rodland, T Liu, WJ Qian… - …, 2016 - Wiley Online Library
Targeted proteomics technique has emerged as a powerful protein quantification tool in
systems biology, biomedical research, and increasing for clinical applications. The most …

Transcription factors and DNA play hide and seek

DM Suter - Trends in cell biology, 2020 - cell.com
Transcription factors (TFs) bind to specific DNA motifs to regulate the expression of target
genes. To reach their binding sites, TFs diffuse in 3D and perform local motions such as 1D …

Systematic dissection of genomic features determining transcription factor binding and enhancer function

SR Grossman, X Zhang, L Wang… - Proceedings of the …, 2017 - National Acad Sciences
Enhancers regulate gene expression through the binding of sequence-specific transcription
factors (TFs) to cognate motifs. Various features influence TF binding and enhancer function …

[HTML][HTML] Absolute quantification of transcription factors reveals principles of gene regulation in erythropoiesis

MA Gillespie, CG Palii, D Sanchez-Taltavull… - Molecular cell, 2020 - cell.com
Dynamic cellular processes such as differentiation are driven by changes in the abundances
of transcription factors (TFs). However, despite years of studies, our knowledge about the …

Probing the target search of DNA-binding proteins in mammalian cells using TetR as model searcher

D Normanno, L Boudarène, C Dugast-Darzacq… - Nature …, 2015 - nature.com
Many cellular functions rely on DNA-binding proteins finding and associating to specific sites
in the genome. Yet the mechanisms underlying the target search remain poorly understood …

Alpha-synuclein post-translational modifications as potential biomarkers for Parkinson disease and other synucleinopathies

AW Schmid, B Fauvet, M Moniatte… - Molecular & Cellular …, 2013 - ASBMB
The development of novel therapies against neurodegenerative disorders requires the
ability to detect their early, presymptomatic manifestations in order to enable treatment …

Transcription factors: specific DNA binding and specific gene regulation

AL Todeschini, A Georges, RA Veitia - Trends in genetics, 2014 - cell.com
Specific recognition of cis-regulatory regions is essential for correct gene regulation in
response to developmental and environmental signals. Such DNA sequences are …

Application of targeted mass spectrometry in bottom-up proteomics for systems biology research

NP Manes, A Nita-Lazar - Journal of proteomics, 2018 - Elsevier
The enormous diversity of proteoforms produces tremendous complexity within cellular
proteomes, facilitates intricate networks of molecular interactions, and constitutes a …