A perspective on enzyme catalysis

SJ Benkovic, S Hammes-Schiffer - Science, 2003 - science.org
The seminal hypotheses proposed over the years for enzymatic catalysis are scrutinized.
The historical record is explored from both biochemical and theoretical perspectives …

Structure, dynamics, and catalytic function of dihydrofolate reductase

JR Schnell, HJ Dyson, PE Wright - Annu. Rev. Biophys. Biomol …, 2004 - annualreviews.org
▪ Abstract Molecular motions are widely regarded as contributing factors in many aspects of
protein function. The enzyme dihydrofolate reductase (DHFR), and particularly that from …

The dynamic energy landscape of dihydrofolate reductase catalysis

DD Boehr, D McElheny, HJ Dyson, PE Wright - science, 2006 - science.org
We used nuclear magnetic resonance relaxation dispersion to characterize higher energy
conformational substates of Escherichia coli dihydrofolate reductase. Each intermediate in …

Conformational selection or induced fit: a flux description of reaction mechanism

GG Hammes, YC Chang… - Proceedings of the …, 2009 - National Acad Sciences
The mechanism of ligand binding coupled to conformational changes in macromolecules
has recently attracted considerable interest. The 2 limiting cases are the “induced fit” …

A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis

G Bhabha, J Lee, DC Ekiert, J Gam, IA Wilson… - Science, 2011 - science.org
Conformational dynamics play a key role in enzyme catalysis. Although protein motions
have clear implications for ligand flux, a role for dynamics in the chemical step of enzyme …

Global kinetic explorer: a new computer program for dynamic simulation and fitting of kinetic data

KA Johnson, ZB Simpson, T Blom - Analytical biochemistry, 2009 - Elsevier
We describe a new dynamic kinetic simulation program that allows multiple data sets to be fit
simultaneously to a single model based on numerical integration of the rate equations …

Loop and Subdomain Movements in the Mechanism of Escherichia coli Dihydrofolate Reductase:  Crystallographic Evidence,

MR Sawaya, J Kraut - Biochemistry, 1997 - ACS Publications
The reaction catalyzed by Escherichia coli dihydrofolate reductase (ecDHFR) cycles through
five detectable kinetic intermediates: holoenzyme, Michaelis complex, ternary product …

The extremely slow and variable activity of dihydrofolate reductase in human liver and its implications for high folic acid intake

SW Bailey, JE Ayling - … of the National Academy of Sciences, 2009 - National Acad Sciences
Numerous clinical trials using folic acid for prevention of cardiovascular disease, stroke,
cognitive decline, and neural tube defects have been completed or are underway. Yet, all …

Hot spots for allosteric regulation on protein surfaces

KA Reynolds, RN McLaughlin, R Ranganathan - Cell, 2011 - cell.com
Recent work indicates a general architecture for proteins in which sparse networks of
physically contiguous and coevolving amino acids underlie basic aspects of structure and …

NMR spectroscopy brings invisible protein states into focus

AJ Baldwin, LE Kay - Nature chemical biology, 2009 - nature.com
Molecular dynamics are essential for protein function. In some cases these dynamics involve
the interconversion between ground state, highly populated conformers and less populated …