Eukaryotic picoplankton in surface oceans

R Massana - Annual review of microbiology, 2011 - annualreviews.org
The eukaryotic picoplankton is a heterogeneous collection of small protists 1 to 3 μm in size
populating surface oceans at abundances of 102 to 104 cells ml− 1. Pigmented cells are …

Molecular detection, quantification, and diversity evaluation of microalgae

V Ebenezer, LK Medlin, JS Ki - Marine biotechnology, 2012 - Springer
This study reviews the available molecular methods and new high-throughput technologies
for their practical use in the molecular detection, quantification, and diversity assessment of …

Phyto REF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy

J Decelle, S Romac, RF Stern… - Molecular ecology …, 2015 - Wiley Online Library
Photosynthetic eukaryotes have a critical role as the main producers in most ecosystems of
the biosphere. The ongoing environmental metabarcoding revolution opens the perspective …

Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from …

S Balzano, D Marie, P Gourvil, D Vaulot - The ISME journal, 2012 - academic.oup.com
The composition of photosynthetic pico and nanoeukaryotes was investigated in the North
East Pacific and the Arctic Ocean with special emphasis on the Beaufort Sea during the …

A robust approach to estimate relative phytoplankton cell abundances from metagenomes

JJ Pierella Karlusich, E Pelletier… - Molecular Ecology …, 2023 - Wiley Online Library
Phytoplankton account for> 45% of global primary production, and have an enormous
impact on aquatic food webs and on the entire Earth System. Their members are found …

Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton

EA Ottesen, R Marin III, CM Preston, CR Young… - The ISME …, 2011 - academic.oup.com
Planktonic microbial activity and community structure is dynamic, and can change
dramatically on time scales of hours to days. Yet for logistical reasons, this temporal scale is …

Particle‐associated and free‐living bacterial communities in an oligotrophic sea are affected by different environmental factors

D Roth Rosenberg, M Haber, J Goldford… - Environmental …, 2021 - Wiley Online Library
In the oceans and seas, environmental conditions change over multiple temporal and spatial
scales. Here, we ask what factors affect the bacterial community structure across time, depth …

Seasonal and geographical transitions in eukaryotic phytoplankton community structure in the Atlantic and Pacific Oceans

CJ Choi, V Jimenez, DM Needham, C Poirier… - Frontiers in …, 2020 - frontiersin.org
Much is known about how broad eukaryotic phytoplankton groups vary according to nutrient
availability in marine ecosystems. However, genus-and species-level dynamics are …

Applications of next-generation sequencing to unravelling the evolutionary history of algae

KM Kim, JH Park, D Bhattacharya… - … journal of systematic …, 2014 - microbiologyresearch.org
First-generation Sanger DNA sequencing revolutionized science over the past three
decades and the current next-generation sequencing (NGS) technology has opened the …

Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean

XL Shi, C Lepère, DJ Scanlan, D Vaulot - PloS one, 2011 - journals.plos.org
The genetic diversity of photosynthetic picoeukaryotes was investigated in the South East
Pacific Ocean. Genetic libraries of the plastid 16S rRNA gene were constructed on …