[HTML][HTML] Off-target effects in CRISPR/Cas9 gene editing

C Guo, X Ma, F Gao, Y Guo - Frontiers in bioengineering and …, 2023 - frontiersin.org
Gene editing stands for the methods to precisely make changes to a specific nucleic acid
sequence. With the recent development of the clustered regularly interspaced short …

[HTML][HTML] Latest developed strategies to minimize the off-target effects in CRISPR-Cas-mediated genome editing

M Naeem, S Majeed, MZ Hoque, I Ahmad - Cells, 2020 - mdpi.com
Gene editing that makes target gene modification in the genome by deletion or addition has
revolutionized the era of biomedicine. Clustered regularly interspaced short palindromic …

Chromothripsis as an on-target consequence of CRISPR–Cas9 genome editing

ML Leibowitz, S Papathanasiou, PA Doerfler… - Nature …, 2021 - nature.com
Genome editing has therapeutic potential for treating genetic diseases and cancer.
However, the currently most practicable approaches rely on the generation of DNA double …

CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens

JP Concordet, M Haeussler - Nucleic acids research, 2018 - academic.oup.com
CRISPOR. org is a web tool for genome editing experiments with the CRISPR–Cas9 system.
It finds guide RNAs in an input sequence and ranks them according to different scores that …

Base-resolution models of transcription-factor binding reveal soft motif syntax

Ž Avsec, M Weilert, A Shrikumar, S Krueger… - Nature …, 2021 - nature.com
The arrangement (syntax) of transcription factor (TF) binding motifs is an important part of the
cis-regulatory code, yet remains elusive. We introduce a deep learning model, BPNet, that …

[HTML][HTML] CRISPR-Cas9 induces large structural variants at on-target and off-target sites in vivo that segregate across generations

I Höijer, A Emmanouilidou, R Östlund… - Nature …, 2022 - nature.com
CRISPR-Cas9 genome editing has potential to cure diseases without current treatments, but
therapies must be safe. Here we show that CRISPR-Cas9 editing can introduce unintended …

Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems

K Nishida, T Arazoe, N Yachie, S Banno, M Kakimoto… - Science, 2016 - science.org
INTRODUCTION To combat invading pathogens, cells develop an adaptive immune
response by changing their own genetic information. In vertebrates, the generation of …

[HTML][HTML] Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR

M Haeussler, K Schönig, H Eckert, A Eschstruth… - Genome biology, 2016 - Springer
Background The success of the CRISPR/Cas9 genome editing technique depends on the
choice of the guide RNA sequence, which is facilitated by various websites. Despite the …

Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion

Z Shimatani, S Kashojiya, M Takayama, R Terada… - Nature …, 2017 - nature.com
We applied a fusion of CRISPR-Cas9 and activation-induced cytidine deaminase (Target-
AID) for point mutagenesis at genomic regions specified by single guide RNAs (sgRNAs) in …

[HTML][HTML] DeepCRISPR: optimized CRISPR guide RNA design by deep learning

G Chuai, H Ma, J Yan, M Chen, N Hong, D Xue, C Zhou… - Genome biology, 2018 - Springer
A major challenge for effective application of CRISPR systems is to accurately predict the
single guide RNA (sgRNA) on-target knockout efficacy and off-target profile, which would …