Biochemical and structural basis of sialic acid utilization by gut microbes

A Bell, E Severi, CD Owen, D Latousakis… - Journal of Biological …, 2023 - ASBMB
The human gastrointestinal (GI) tract harbors diverse microbial communities collectively
known as the gut microbiota that exert a profound impact on human health and disease. The …

Selective nutrient transport in bacteria: multicomponent transporter systems reign supreme

JS Davies, MJ Currie, JD Wright… - Frontiers in Molecular …, 2021 - frontiersin.org
Multicomponent transporters are used by bacteria to transport a wide range of nutrients.
These systems use a substrate-binding protein to bind the nutrient with high affinity and then …

TRAPs: the 'elevator-with-an-operator'mechanism

JS Davies, MJ Currie, RCJ Dobson, CR Horne… - Trends in Biochemical …, 2024 - cell.com
Tripartite ATP-independent periplasmic (TRAP) transporters are nutrient-uptake systems
found in bacteria and archaea. These evolutionary divergent transporter systems couple a …

[HTML][HTML] On the function of TRAP substrate-binding proteins: conformational variation of the sialic acid binding protein SiaP

TRJ King-Hudson, JS Davies, S Quan, MJ Currie… - Journal of Biological …, 2024 - Elsevier
Tripartite ATP-independent periplasmic (TRAP) transporters are analogous to ABC
transporters in that they use a substrate-binding protein to scavenge metabolites (eg, N …

Recruitment of a Middling Promiscuous Enzyme Drives Adaptive Metabolic Evolution in Escherichia coli

RP Campbell, AC Whittington… - … Biology and Evolution, 2023 - academic.oup.com
A key step in metabolic pathway evolution is the recruitment of promiscuous enzymes to
perform new functions. Despite the recognition that promiscuity is widespread in biology …

The ROK kinase N-acetylglucosamine kinase uses a sequential random enzyme mechanism with successive conformational changes upon each substrate binding

S Roy, MV Vega, JR Ames, N Britten, A Kent… - Journal of Biological …, 2023 - ASBMB
N-acetyl-d-glucosamine (GlcNAc) is a major component of bacterial cell walls. Many
organisms recycle GlcNAc from the cell wall or metabolize environmental GlcNAc. The first …

Using cryo-EM to uncover mechanisms of bacterial transcriptional regulation

DM Wood, RCJ Dobson… - Biochemical Society …, 2021 - portlandpress.com
Transcription is the principal control point for bacterial gene expression, and it enables a
global cellular response to an intracellular or environmental trigger. Transcriptional …

Multi-wavelength analytical ultracentrifugation as a tool to characterise protein–DNA interactions in solution

CR Horne, A Henrickson, B Demeler… - European Biophysics …, 2020 - Springer
Understanding how proteins interact with DNA, and particularly the stoichiometry of a protein–
DNA complex, is key information needed to elucidate the biological role of the interaction, eg …

Enzyme Kinetics Analysis: An online tool for analyzing enzyme initial rate data and teaching enzyme kinetics

DA Mak, S Dunn, D Coombes… - Biochemistry and …, 2024 - Wiley Online Library
Enzymes are nature's catalysts, mediating chemical processes in living systems. The study
of enzyme function and mechanism includes defining the maximum catalytic rate and affinity …

Molecular determinants of Neu5Ac binding to a tripartite ATP independent periplasmic (TRAP) transporter

P Goyal, KV Dhanabalan, M Scalise, R Friemann… - bioRxiv, 2024 - biorxiv.org
N-Acetylneuraminic acid (Neu5Ac) is a negatively charged nine-carbon sugar that is often
the peripheral sugar in human cell-surface glycoconjugates. Some bacteria scavenge …