Human CMV transcripts: an overview

Y Ma, N Wang, M Li, S Gao, L Wang, B Zheng… - Future …, 2012 - Taylor & Francis
The human CMV (HCMV) genome consists of an approximately 230-kb dsDNA and is
predicted to contain over 165 open reading frames. Although the entire sequence of the …

Internal RNA 2′-O-methylation on the HIV-1 genome impairs reverse transcription

A Decombe, O Peersen, P Sutto-Ortiz… - Nucleic Acids …, 2024 - academic.oup.com
Viral RNA genomes are modified by epitranscriptomic marks, including 2′-O-methylation
that is added by cellular or viral methyltransferases. 2′-O-Methylation modulates RNA …

Mechanism of HIV reverse transcriptase inhibition by zinc: formation of a highly stable enzyme-(primer-template) complex with profoundly diminished catalytic activity

KJ Fenstermacher, JJ DeStefano - Journal of Biological Chemistry, 2011 - ASBMB
Several physiologically relevant cations including Ca 2+, Mn 2+, and Zn 2+ have been
shown to inhibit HIV reverse transcriptase (RT), presumably by competitively displacing one …

Structure of HIV‐1 reverse transcriptase bound to a novel 38‐mer hairpin template‐primer DNA aptamer

MT Miller, S Tuske, K Das, JJ DeStefano… - Protein …, 2016 - Wiley Online Library
The development of a modified DNA aptamer that binds HIV‐1 reverse transcriptase (RT)
with ultra‐high affinity has enabled the X‐ray structure determination of an HIV‐1 RT‐DNA …

Sliding of HIV-1 reverse transcriptase over DNA creates a transient P pocket–targeting P-pocket by fragment screening

AK Singh, SE Martinez, W Gu, H Nguyen… - Nature …, 2021 - nature.com
Abstract HIV-1 reverse transcriptase (RT) slides over an RNA/DNA or dsDNA substrate while
copying the viral RNA to a proviral DNA. We report a crystal structure of RT/dsDNA complex …

DNA–RNA hybrid duplexes with decreasing pyrimidine content in the DNA strand provide structural snapshots for the A-to B-form conformational transition of nucleic …

G Suresh, UD Priyakumar - Physical Chemistry Chemical Physics, 2014 - pubs.rsc.org
DNA–RNA hybrids are heterogeneous nucleic acid duplexes consisting of a DNA strand
and a RNA strand, and are formed as key intermediates in many important biological …

Gc-content dependence of elastic and overstretching properties of DNA: RNA hybrid duplexes

D Yang, W Liu, X Deng, W Xie, H Chen, Z Zhong… - Biophysical Journal, 2020 - cell.com
DNA: RNA hybrid duplex plays important roles in various biological processes. Both its
structural stability and interactions with proteins are highly sequence dependent. In this …

The RNA–DNA hybrid structure determined by EPR, CD and RNase H1

O Romainczyk, B Endeward, TF Prisner… - Molecular …, 2011 - pubs.rsc.org
A or B: RNA–DNA hybrids, key intermediates in gene regulation, were classified by pulsed
electron–electron double resonance (PELDOR) in combination with CD spectroscopy into …

[HTML][HTML] Integrative structural biology studies of HIV-1 reverse transcriptase binding to a high-affinity DNA aptamer

S Tuske, J Zheng, ED Olson, FX Ruiz, BD Pascal… - Current research in …, 2020 - Elsevier
The high-resolution crystal structure of HIV-1 reverse transcriptase (RT) bound to a 38-mer
DNA hairpin aptamer with low pM affinity was previously described. The high-affinity binding …

A highly sensitive aptamer-based HIV reverse transcriptase detection assay

JJ DeStefano, IA Ferreira-Bravo - Journal of virological methods, 2018 - Elsevier
Although many new assays for HIV have been developed, several labs still use simple and
reliable radioactivity-based reverse transcriptase (RT) nucleotide incorporation assays for …