NAPS: network analysis of protein structures

B Chakrabarty, N Parekh - Nucleic acids research, 2016 - academic.oup.com
Traditionally, protein structures have been analysed by the secondary structure architecture
and fold arrangement. An alternative approach that has shown promise is modelling …

Reviewing the Structure–Function Paradigm in Polyglutamine Disorders: A Synergistic Perspective on Theoretical and Experimental Approaches

NS Moldovean-Cioroianu - International Journal of Molecular Sciences, 2024 - mdpi.com
Polyglutamine (polyQ) disorders are a group of neurodegenerative diseases characterized
by the excessive expansion of CAG (cytosine, adenine, guanine) repeats within host …

Identifying tandem Ankyrin repeats in protein structures

B Chakrabarty, N Parekh - BMC bioinformatics, 2014 - Springer
Background Tandem repetition of structural motifs in proteins is frequently observed across
all forms of life. Topology of repeating unit and its frequency of occurrence are associated to …

PRIGSA: protein repeat identification by graph spectral analysis

B Chakrabarty, N Parekh - Journal of bioinformatics and …, 2014 - World Scientific
Repetition of a structural motif within protein is associated with a wide range of structural and
functional roles. In most cases the repeating units are well conserved at the structural level …

A social network analysis of world cities network

D Radha, S Kulkarni - 2017 2nd International Conference on …, 2017 - ieeexplore.ieee.org
Social network presents a variety of data in a network format. Networks may vary according
to subjects. Social network analysis (SNA) can be done in different ways. There are various …

Graph centrality analysis of structural ankyrin repeats

B Chakrabarty, N Parekh - International Journal of Computer …, 2014 - cspub-ijcisim.org
In recent studies it has been shown that graph representation of protein structures is capable
of capturing the 3-dimensional fold of the protein very well, thus providing a computationally …

Network based Identification and Analysis of Structural Repeat Proteins

B Chakrabarty - 2018 - shodhganga.inflibnet.ac.in
Tandemly repeated structural motifs form integrated assemblies with multiple binding sites
and facilitate various protein-protein/DNA/RNA interactions. The evolutionary conservation …

[PDF][PDF] Network Analysis of Protein Structures

B Chakrabarty, V Naganathan, K Garg, Y Agarwal… - 2018 - cdn.iiit.ac.in
NAPS is an online portal for the construction and analysis of Protein Contact Network (PCN),
also referred as Residue Interaction Network (RIN), or protein structure graph (PSG). A …