Quantifying hidden order out of equilibrium

S Martiniani, PM Chaikin, D Levine - Physical Review X, 2019 - APS
While the equilibrium properties, states, and phase transitions of interacting systems are well
described by statistical mechanics, the lack of suitable state parameters has hindered the …

Multiscale structural complexity of natural patterns

AA Bagrov, IA Iakovlev, AA Iliasov… - Proceedings of the …, 2020 - National Acad Sciences
Complexity of patterns is key information for human brain to differ objects of about the same
size and shape. Like other innate human senses, the complexity perception cannot be easily …

Universal and accessible entropy estimation using a compression algorithm

R Avinery, M Kornreich, R Beck - Physical review letters, 2019 - APS
Entropy and free-energy estimation are key in thermodynamic characterization of simulated
systems ranging from spin models through polymers, colloids, protein structure, and drug …

Complexity and transition to chaos in coupled Adler-type oscillators

D Estevez-Moya, E Estevez-Rams, H Kantz - Physical Review E, 2023 - APS
Coupled nonlinear oscillators are ubiquitous in dynamical studies. A wealth of behaviors
have been found mostly for globally coupled systems. From a complexity perspective, less …

Canonical Monte Carlo multispin cluster method

K Makarova, A Makarov, V Strongin, I Titovets… - … of Computational and …, 2023 - Elsevier
We present a new Canonical Multispin-flip Cluster Monte Carlo algorithm for Ising model
and describe efficient implementations for hybrid supercomputer. Our method takes …

Quantifying spatiotemporal patterns in classical and quantum systems out of equilibrium

EA Maletskii, IA Iakovlev, VV Mazurenko - Physical Review E, 2024 - APS
A rich variety of nonequilibrium dynamical phenomena and processes unambiguously calls
for the development of general numerical techniques to probe and estimate a complex …

DeltaGzip: Computing Biopolymer–Ligand Binding Affinity via Kolmogorov Complexity and Lossless Compression

T Liu, L Simine - Journal of Chemical Information and Modeling, 2024 - ACS Publications
The design of biosequences for biosensing and therapeutics is a challenging multistep
search and optimization task. In principle, computational modeling may speed up the design …

Phenomenology of coupled nonlinear oscillators

E Estevez-Rams, D Estevez-Moya… - … Journal of Nonlinear …, 2018 - pubs.aip.org
A recently introduced model of coupled nonlinear oscillators in a ring is revisited in terms of
its information processing capabilities. The use of Lempel-Ziv based entropic measures …

Resolving entropy contributions in nonequilibrium transitions

B Sorkin, J Ricouvier, H Diamant, G Ariel - Physical Review E, 2023 - APS
We derive a functional for the entropy contributed by any microscopic degrees of freedom as
arising from their measurable pair correlations. Applicable both in and out of equilibrium, this …

Computational capabilities at the edge of chaos for one dimensional systems undergoing continuous transitions

E Estevez-Rams, D Estevez-Moya… - … Journal of Nonlinear …, 2019 - pubs.aip.org
While there has been a keen interest in studying computation at the edge of chaos for
dynamical systems undergoing a phase transition, this has come under question for cellular …