A user's guide to golden gate cloning methods and standards

JE Bird, J Marles-Wright, A Giachino - ACS Synthetic Biology, 2022 - ACS Publications
The continual demand for specialized molecular cloning techniques that suit a broad range
of applications has driven the development of many different cloning strategies. One method …

Combinatorial metabolic pathway assembly approaches and toolkits for modular assembly

R Young, M Haines, M Storch, PS Freemont - Metabolic Engineering, 2021 - Elsevier
Synthetic Biology is a rapidly growing interdisciplinary field that is primarily built upon
foundational advances in molecular biology combined with engineering design principles …

Golden gate shuffling: a one-pot DNA shuffling method based on type IIs restriction enzymes

C Engler, R Gruetzner, R Kandzia, S Marillonnet - PloS one, 2009 - journals.plos.org
We have developed a protocol to assemble in one step and one tube at least nine separate
DNA fragments together into an acceptor vector, with 90% of recombinant clones obtained …

Microbial strain improvement by a HTP genomic engineering platform

Z Serber, EJ Dean, S Manchester, K Gora… - US Patent …, 2018 - Google Patents
2017-02-28 Assigned to Zymergen, Inc. reassignment Zymergen, Inc. ASSIGNMENT OF
ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: SHELLMAN, ERIN …

Golden gate cloning

C Engler, S Marillonnet - DNA cloning and assembly methods, 2014 - Springer
DNA assembly methods are essential tools for biological research and biotechnology.
Therefore various methods have been developed to clone DNA fragments of interest …

A versatile and efficient high-throughput cloning tool for structural biology

ER Geertsma, R Dutzler - Biochemistry, 2011 - ACS Publications
Methods for the cloning of large numbers of open reading frames into expression vectors are
of critical importance for challenging structural biology projects. Here we describe a system …

Reversible Dimerization of Aequorea victoria Fluorescent Proteins Increases the Dynamic Range of FRET-Based Indicators

I Kotera, T Iwasaki, H Imamura, H Noji… - ACS chemical …, 2010 - ACS Publications
Fluorescent protein (FP)-based Förster resonance energy transfer (FRET) technology is
useful for development of functional indicators to visualize second messenger molecules …

Generation of families of construct variants using golden gate shuffling

C Engler, S Marillonnet - cDNA Libraries: Methods and Applications, 2011 - Springer
Current standard cloning methods based on the use of restriction enzymes and ligase are
very versatile, but are not well suited for high-throughput cloning projects or for assembly of …

A high-throughput colorimetric screening assay for terpene synthase activity based on substrate consumption

M Furubayashi, M Ikezumi, J Kajiwara, M Iwasaki… - PloS one, 2014 - journals.plos.org
Terpene synthases catalyze the formation of a variety of terpene chemical structures.
Systematic mutagenesis studies have been effective in providing insights into the …

Combinatorial DNA assembly using Golden Gate cloning

C Engler, S Marillonnet - Synthetic Biology, 2013 - Springer
A basic requirement for synthetic biology is the availability of efficient DNA assembly
methods. We have previously reported the development of Golden Gate cloning, a method …