Microbial niches in marine oxygen minimum zones

AD Bertagnolli, FJ Stewart - Nature Reviews Microbiology, 2018 - nature.com
In the ocean's major oxygen minimum zones (OMZs), oxygen is effectively absent from sea
water and life is dominated by microorganisms that use chemicals other than oxygen for …

The long-term relationship between microbial metabolism and greenhouse gases

LY Stein - Trends in microbiology, 2020 - cell.com
The production and consumption of the potent greenhouse gases, nitrous oxide and
methane, are largely controlled by microorganisms that have long been assigned to defined …

Unraveling core functional microbiota in traditional solid-state fermentation by high-throughput amplicons and metatranscriptomics sequencing

Z Song, H Du, Y Zhang, Y Xu - Frontiers in microbiology, 2017 - frontiersin.org
Fermentation microbiota is specific microorganisms that generate different types of
metabolites in many productions. In traditional solid-state fermentation, the structural …

The importance of abiotic reactions for nitrous oxide production

X Zhu-Barker, AR Cavazos, NE Ostrom, WR Horwath… - Biogeochemistry, 2015 - Springer
The continuous rise of atmospheric nitrous oxide (N 2 O) is an environmental issue of global
concern. In biogeochemical studies, N 2 O production is commonly assumed to arise solely …

Functional traits resolve mechanisms governing the assembly and distribution of nitrogen-cycling microbial communities in the global ocean

W Song, J Liu, W Qin, J Huang, X Yu, M Xu, D Stahl… - MBio, 2022 - Am Soc Microbiol
Microorganisms drive much of the marine nitrogen (N) cycle, which jointly controls the
primary production in the global ocean. However, our understanding of the microbial …

The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments

Y Nishimura, S Yoshizawa - Scientific Data, 2022 - nature.com
Marine microorganisms are immensely diverse and play fundamental roles in global
geochemical cycling. Recent metagenome-assembled genome studies, with particular …

SAR11 bacteria linked to ocean anoxia and nitrogen loss

D Tsementzi, J Wu, S Deutsch, S Nath… - Nature, 2016 - nature.com
Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich
surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where …

Stripping away the soil: plant growth promoting microbiology opportunities in aquaponics

RP Bartelme, BO Oyserman, JE Blom… - Frontiers in …, 2018 - frontiersin.org
As the processes facilitated by plant growth promoting microorganisms (PGPMs) become
better characterized, it is evident that PGPMs may be critical for successful sustainable …

Partitioning of the denitrification pathway and other nitrite metabolisms within global oxygen deficient zones

IH Zhang, X Sun, A Jayakumar, SG Fortin… - ISME …, 2023 - academic.oup.com
Oxygen deficient zones (ODZs) account for about 30% of total oceanic fixed nitrogen loss via
processes including denitrification, a microbially mediated pathway proceeding stepwise …

Cyanobacteria and cyanophage contributions to carbon and nitrogen cycling in an oligotrophic oxygen-deficient zone

CA Fuchsman, HI Palevsky, B Widner, M Duffy… - The ISME …, 2019 - academic.oup.com
Up to half of marine N losses occur in oxygen-deficient zones (ODZs). Organic matter flux
from productive surface waters is considered a primary control on N2 production. Here we …