Dynamics in microbial communities: unraveling mechanisms to identify principles

A Konopka, S Lindemann, J Fredrickson - The ISME journal, 2015 - academic.oup.com
Diversity begets higher-order properties such as functional stability and robustness in
microbial communities, but principles that inform conceptual (and eventually predictive) …

A review of microalgal biofilm technologies: definition, applications, settings and analysis

JH Moreno Osorio, A Pollio, L Frunzo… - Frontiers in Chemical …, 2021 - frontiersin.org
Biofilm-based algal cultivation has many advantages over the conventional suspended
growth methods and has received increased attention as a potential platform for algal …

MPLEx: a robust and universal protocol for single-sample integrative proteomic, metabolomic, and lipidomic analyses

ES Nakayasu, CD Nicora, AC Sims… - …, 2016 - Am Soc Microbiol
Integrative multi-omics analyses can empower more effective investigation and complete
understanding of complex biological systems. Despite recent advances in a range of omics …

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies

V Sevim, J Lee, R Egan, A Clum, H Hundley, J Lee… - Scientific data, 2019 - nature.com
Metagenomic sequence data from defined mock communities is crucial for the assessment
of sequencing platform performance and downstream analyses, including assembly, binning …

Phycosphere bacterial diversity in green algae reveals an apparent similarity across habitats

R Ramanan, Z Kang, BH Kim, DH Cho, L Jin, HM Oh… - Algal Research, 2015 - Elsevier
Phytoplankton and bacteria play the foremost role in primary production and often act in
unison in biogeochemical cycling. Studies conducted so far are inconclusive on species …

Metabolic cross-feeding structures the assembly of polysaccharide degrading communities

S Pontrelli, R Szabo, S Pollak, J Schwartzman… - Science …, 2022 - science.org
Metabolic processes that fuel the growth of heterotrophic microbial communities are initiated
by specialized biopolymer degraders that decompose complex forms of organic matter. It is …

[HTML][HTML] The importance of filamentous cyanobacteria in the development of oxygenic photogranules

K Milferstedt, WC Kuo-Dahab, CS Butler, J Hamelin… - Scientific reports, 2017 - nature.com
Microorganisms often respond to their environment by growing as densely packed
communities in biofilms, flocs or granules. One major advantage of life in these aggregates …

Forfeiting the priority effect: turnover defines biofilm community succession

CJ Brislawn, EB Graham, K Dana, P Ihardt… - The ISME …, 2019 - academic.oup.com
Microbial community succession is a fundamental process that affects underlying functions
of almost all ecosystems; yet the roles and fates of the most abundant colonizers are often …

Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats

HL Wong, DL Smith, PT Visscher, BP Burns - Scientific reports, 2015 - nature.com
Modern microbial mats can provide key insights into early Earth ecosystems and Shark Bay,
Australia, holds one of the best examples of these systems. Identifying the spatial distribution …

A metagenomic approach to cyanobacterial genomics

DO Alvarenga, MF Fiore, AM Varani - Frontiers in microbiology, 2017 - frontiersin.org
Cyanobacteria, or oxyphotobacteria, are primary producers that establish ecological
interactions with a wide variety of organisms. Although their associations with eukaryotes …