Global vision of druggability issues: applications and perspectives

H Abi Hussein, C Geneix, M Petitjean, A Borrel… - Drug discovery today, 2017 - Elsevier
During the preliminary stage of a drug discovery project, the lack of druggability information
and poor target selection are the main causes of frequent failures. Elaborating on accurate …

Deciphering the lexicon of protein targets: a review on multifaceted drug discovery in the era of artificial intelligence

S Nandi, S Bhaduri, D Das, P Ghosh… - Molecular …, 2024 - ACS Publications
Understanding protein sequence and structure is essential for understanding protein–
protein interactions (PPIs), which are essential for many biological processes and diseases …

Computational modeling of imines based anti-oxidant and anti-esterases compounds: synthesis, single crystal and in-vitro assessment

MA Raza, U Farwa, M Danish, S Ozturk… - … Biology and Chemistry, 2023 - Elsevier
Molecular modeling strategy was adopted to check the biological potential of the imine
based molecules against free radical, acetylcholine esterase and butyrylcholine esterase …

PathDetect-SOM: A neural network approach for the identification of pathways in ligand binding simulations

S Motta, L Callea, L Bonati… - Journal of Chemical Theory …, 2022 - ACS Publications
Understanding the process of ligand–protein recognition is important to unveil biological
mechanisms and to guide drug discovery and design. Enhanced-sampling molecular …

ADME-Space: a new tool for medicinal chemists to explore ADME properties

G Bocci, E Carosati, P Vayer, A Arrault, S Lozano… - Scientific reports, 2017 - nature.com
We introduce a new chemical space for drugs and drug-like molecules, exclusively based
on their in silico ADME behaviour. This ADME-Space is based on self-organizing map …

Repurposing FDA-approved drugs targeting SARS-CoV2 3CLpro: a study by applying virtual screening, molecular dynamics, MM-PBSA calculations and Covalent …

IJ Santos Nascimento, TM Aquino… - Letters in Drug …, 2022 - ingentaconnect.com
Background: Since the end of 2019, the etiologic agent SAR-CoV-2 responsible for one of
the most significant epidemics in history has caused severe global economic, social, and …

Evaluating Biofilm Inhibitory Potential in Fish Pathogen, Aeromonas hydrophila by Agricultural Waste Extracts and Assessment of Aerolysin Inhibitors Using In Silico …

M Arumugam, DB Manikandan, SK Marimuthu… - Antibiotics, 2023 - mdpi.com
Aeromonas hydrophila, an opportunistic bacteria, causes several devastating diseases in
humans and animals, particularly aquatic species. Antibiotics have been constrained by the …

Discovery of new potent lysine specific histone demythelase-1 inhibitors (LSD-1) using structure based and ligand based molecular modelling and machine learning

SJ Alabed, M Zihlif, M Taha - RSC advances, 2022 - pubs.rsc.org
Lysine-specific histone demethylase 1 (LSD-1) is an epigenetic enzyme that oxidatively
cleaves methyl groups from monomethyl and dimethyl Lys4 of histone H3 and is highly …

No dance, no partner! A tale of receptor flexibility in docking and virtual screening

A Basciu, L Callea, S Motta, AMJJ Bonvin… - Annual Reports in …, 2022 - Elsevier
Modern drug design relies on a detailed understanding of the molecular recognition process
by which biological partners such as a protein and a drug interact and bind to each other …

The artificial neural network selects saccharides from natural sources a promise for potential FimH inhibitor to prevent UTI infections

M Dhanalakshmi, M Pandya, D Sruthi, KR Jinuraj… - In Silico …, 2024 - Springer
The major challenge in the development of affordable medicines from natural sources is the
unavailability of logical protocols to explain their mechanism of action in biological targets …