In recent years, DNA has emerged as a fascinating building material to engineer hydrogel
due to its excellent programmability, which has gained considerable attention in biomedical …

Translation physically links the genotype and the phenotype and thereby defines them. The
process is a necessary precondition to the evolu-tion of all macromolecular structure. The …

Accurate predictions of RNA secondary structures can help uncover the roles of functional
non-coding RNAs. Although machine learning-based models have achieved high …

Background Secondary structure forms an important intermediate level of description of
nucleic acids that encapsulates the dominating part of the folding energy, is often well …

The abbreviated name,'mfold web server', describes a number of closely related software
applications available on the World Wide Web (WWW) for the prediction of the secondary …

A unified view of polymer, dumbbell, and oligonucleotide nearest-neighbor (NN)
thermodynamics is presented. DNA NN ΔG° 37 parameters from seven laboratories are …

This paper presents a new computer method for folding an RNA molecule that finds a
conformation of minimum free energy using published values of stacking and destabilizing …

We report the complete thermodynamic library of all 10 Watson-Crick DNA nearest-neighbor
interactions. We obtained the relevant thermodynamic data from calorimetric studies on 19 …

A dynamic programming algorithm for prediction of RNA secondary structure has been
revised to accommodate folding constraints determined by chemical modification and to …

A novel application of dynamic programming to the folding problem for RNA enables one to
calculate the full equilibrium partition function for secondary structure and the probabilities of …