Similarity-based queries for time series data

D Rafiei, A Mendelzon - Proceedings of the 1997 ACM SIGMOD …, 1997 - dl.acm.org
We study a set of linear transformations on the Fourier series representation of a sequence
that can be used as the basis for similarity queries on time-series data. We show that our set …

Cell-graphs: image-driven modeling of structure-function relationship

B Yener - Communications of the ACM, 2016 - dl.acm.org
Cell-graphs: image-driven modeling of structure-function relationship Page 1 74
COMMUNICATIONS OF THE ACM | JANUARY 2017 | VOL. 60 | NO. 1 review articles THE …

Accelerated mineralization of dense collagen-nano bioactive glass hybrid gels increases scaffold stiffness and regulates osteoblastic function

B Marelli, CE Ghezzi, D Mohn, WJ Stark, JE Barralet… - Biomaterials, 2011 - Elsevier
Plastically compressed dense collagen (DC) gels mimic the microstructural, mechanical,
and biological properties of native osteoid. This study investigated the effect of hybridizing …

Coupled analysis of in vitro and histology tissue samples to quantify structure-function relationship

E Acar, GE Plopper, B Yener - PloS one, 2012 - journals.plos.org
The structure/function relationship is fundamental to our understanding of biological systems
at all levels, and drives most, if not all, techniques for detecting, diagnosing, and treating …

Multiscale feature analysis of salivary gland branching morphogenesis

CC Bilgin, S Ray, B Baydil, WP Daley, M Larsen… - PLoS …, 2012 - journals.plos.org
Pattern formation in developing tissues involves dynamic spatio-temporal changes in
cellular organization and subsequent evolution of functional adult structures. Branching …

Prediction of growth factor-dependent cleft formation during branching morphogenesis using a dynamic graph-based growth model

N Dhulekar, S Ray, D Yuan, A Baskaran… - IEEE/ACM …, 2015 - ieeexplore.ieee.org
This study considers the problem of describing and predicting cleft formation during the early
stages of branching morphogenesis in mouse submandibular salivary glands (SMG) under …

Automatic tumor-stroma separation in fluorescence TMAs enables the quantitative high-throughput analysis of multiple cancer biomarkers

B Lahrmann, N Halama, HP Sinn, P Schirmacher… - PLoS …, 2011 - journals.plos.org
The upcoming quantification and automation in biomarker based histological tumor
evaluation will require computational methods capable of automatically identifying tumor …

Global changes in the connectome in autism spectrum disorders

CJ Goch, B Oztan, B Stieltjes, R Henze… - … Diffusion MRI and Brain …, 2014 - Springer
There is an increasing interest in connectomics as means to characterize the brain both in
healthy controls and in disease. Connectomics strongly relies on graph theory to derive …

Biologically-driven cell-graphs for breast tissue grading

B Oztan, KR Shubert, CS Bjornsson… - 2013 IEEE 10th …, 2013 - ieeexplore.ieee.org
We present biologically-driven cell-graphs for the computer-aided grading of cancer in 3D
breast tissue slides. Cell-graphs were previously proposed to capture structure-function …

A novel dynamic graph-based computational model for predicting salivary gland branching morphogenesis

N Dhulekar, L Bange, A Baskaran… - 2012 IEEE …, 2012 - ieeexplore.ieee.org
In this paper, we introduce a biologically motivated dynamic graph-based growth model to
describe and predict the stages of cleft formation during the process of branching …