Noise in biology

LS Tsimring - Reports on Progress in Physics, 2014 - iopscience.iop.org
Noise permeates biology on all levels, from the most basic molecular, sub-cellular
processes to the dynamics of tissues, organs, organisms and populations. The functional …

Stochastic models of population extinction

O Ovaskainen, B Meerson - Trends in ecology & evolution, 2010 - cell.com
Theoretical ecologists have long sought to understand how the persistence of populations
depends on biotic and abiotic factors. Classical work showed that demographic stochasticity …

[图书][B] A kinetic view of statistical physics

PL Krapivsky, S Redner, E Ben-Naim - 2010 - books.google.com
Aimed at graduate students, this book explores some of the core phenomena in non-
equilibrium statistical physics. It focuses on the development and application of theoretical …

WKB theory of large deviations in stochastic populations

M Assaf, B Meerson - Journal of Physics A: Mathematical and …, 2017 - iopscience.iop.org
Stochasticity can play an important role in the dynamics of biologically relevant populations.
These span a broad range of scales: from intra-cellular populations of molecules to …

Fluctuating epidemics on adaptive networks

LB Shaw, IB Schwartz - Physical Review E—Statistical, Nonlinear, and Soft …, 2008 - APS
A model for epidemics on an adaptive network is considered. Nodes follow a susceptible-
infective-recovered-susceptible pattern. Connections are rewired to break links from …

Extinction of metastable stochastic populations

M Assaf, B Meerson - Physical Review E—Statistical, Nonlinear, and Soft …, 2010 - APS
We investigate the phenomenon of extinction of a long-lived self-regulating stochastic
population, caused by intrinsic (demographic) noise. Extinction typically occurs via one of …

Master equations and the theory of stochastic path integrals

MF Weber, E Frey - Reports on Progress in Physics, 2017 - iopscience.iop.org
This review provides a pedagogic and self-contained introduction to master equations and
to their representation by path integrals. Since the 1930s, master equations have served as …

Enhanced vaccine control of epidemics in adaptive networks

LB Shaw, IB Schwartz - Physical Review E—Statistical, Nonlinear, and Soft …, 2010 - APS
We study vaccine control for disease spread on an adaptive network modeling disease
avoidance behavior. Control is implemented by adding Poisson-distributed vaccination of …

Control of stochastic and induced switching in biophysical networks

DK Wells, WL Kath, AE Motter - Physical Review X, 2015 - APS
Noise caused by fluctuations at the molecular level is a fundamental part of intracellular
processes. While the response of biological systems to noise has been studied extensively …

How colored environmental noise affects population extinction

A Kamenev, B Meerson, B Shklovskii - Physical review letters, 2008 - APS
Environmental noise can cause an exponential reduction in the mean time to extinction
(MTE) of an isolated population. We study this effect on an example of a stochastic birth …