The five pillars of computational reproducibility: bioinformatics and beyond

M Ziemann, P Poulain, A Bora - Briefings in Bioinformatics, 2023 - academic.oup.com
Computational reproducibility is a simple premise in theory, but is difficult to achieve in
practice. Building upon past efforts and proposals to maximize reproducibility and rigor in …

Deep reinforcement learning for treatment planning in high-dose-rate cervical brachytherapy

G Pu, S Jiang, Z Yang, Y Hu, Z Liu - Physica Medica, 2022 - Elsevier
Purpose High-dose-rate (HDR) brachytherapy (BT) is an effective cancer treatment method
in which the radiation source is placed within the body. Treatment planning is a critical …

Implementation of the Australian Computer‐Assisted Theragnostics (AusCAT) network for radiation oncology data extraction, reporting and distributed learning

M Field, S Vinod, N Aherne, M Carolan… - Journal of medical …, 2021 - Wiley Online Library
Introduction There is significant potential to analyse and model routinely collected data for
radiotherapy patients to provide evidence to support clinical decisions, particularly where …

[HTML][HTML] Robustness and reproducibility of radiomics in T2 weighted images from magnetic resonance image guided linear accelerator in a phantom study

M Sun, A Baiyasi, X Liu, X Shi, X Li, J Zhu, Y Yin, J Hu… - Physica Medica, 2022 - Elsevier
Purpose Quantitative radiomics features extracted from medical images have been shown to
provide value in predicting clinical outcomes. The study for robustness and reproducibility of …

[HTML][HTML] Enhancing the impact of Artificial Intelligence in Medicine: A joint AIFM-INFN Italian initiative for a dedicated cloud-based computing infrastructure

A Retico, M Avanzo, T Boccali, D Bonacorsi, F Botta… - Physica Medica, 2021 - Elsevier
Artificial Intelligence (AI) techniques have been implemented in the field of Medical Imaging
for more than forty years. Medical Physicists, Clinicians and Computer Scientists have been …

[HTML][HTML] Longitudinal Image Data for Outcome Modeling

JE van Timmeren, J Bussink, P Koopmans, RJ Smeenk… - Clinical Oncology, 2024 - Elsevier
In oncology, medical imaging is crucial for diagnosis, treatment planning and therapy
execution. Treatment responses can be complex and varied and are known to involve …

Transparency in quality of radiotherapy for breast cancer in the Netherlands: a national registration of radiotherapy-parameters

N Maliko, MR Stam, LJ Boersma… - Radiation …, 2022 - Springer
Background Radiotherapy (RT) is part of the curative treatment of approximately 70% of
breast cancer (BC) patients. Wide practice variation has been reported in RT dose …

[HTML][HTML] A knowledge graph representation of baseline characteristics for the Dutch proton therapy research registry

M Sloep, P Kalendralis, A Choudhury, L Seyben… - Clinical and …, 2021 - Elsevier
Cancer registries collect multisource data and provide valuable information that can lead to
unique research opportunities. In the Netherlands, a registry and model-based approach …

[HTML][HTML] Agriculture Data Platform–Institutional Data Repository–Selected Aspects

M Stočes, J Vaněk, J Jarolímek, V Novák… - Agris on-line Papers in …, 2023 - online.agris.cz
This paper presents selected aspects of a data platform to store agricultural data. It analyses
the key user and system requirements for the data platform. The presented aspects were …

Data Management Plan for Healthcare: Following FAIR Principles and Addressing Cybersecurity Aspects. A Systematic Review using InstructGPT

A Stanciu - medRxiv, 2023 - medrxiv.org
This study focuses on data-related aspects and emphasizes the importance of producing a
data management plan (DMP) to address the challenges specific to the collection …