Single-cell analysis targeting the proteome

M Labib, SO Kelley - Nature Reviews Chemistry, 2020 - nature.com
The existence of cellular heterogeneity and its central relevance to biological phenomena
provides a strong rationale for a need for analytical methods that enable analysis at the …

Immune monitoring using mass cytometry and related high-dimensional imaging approaches

FJ Hartmann, SC Bendall - Nature Reviews Rheumatology, 2020 - nature.com
The cellular complexity and functional diversity of the human immune system necessitate the
use of high-dimensional single-cell tools to uncover its role in multifaceted diseases such as …

The immunoregulatory landscape of human tuberculosis granulomas

EF McCaffrey, M Donato, L Keren, Z Chen… - Nature …, 2022 - nature.com
Tuberculosis (TB) in humans is characterized by formation of immune-rich granulomas in
infected tissues, the architecture and composition of which are thought to affect disease …

ImmPort, toward repurposing of open access immunological assay data for translational and clinical research

S Bhattacharya, P Dunn, CG Thomas, B Smith… - Scientific data, 2018 - nature.com
Immunology researchers are beginning to explore the possibilities of reproducibility, reuse
and secondary analyses of immunology data. Open-access datasets are being applied in …

Overcoming genetically based resistance mechanisms to PD-1 blockade

DY Torrejon, G Abril-Rodriguez, AS Champhekar… - Cancer discovery, 2020 - AACR
Mechanism-based strategies to overcome resistance to PD-1 blockade therapy are urgently
needed. We developed genetic acquired resistant models of JAK1, JAK2, and B2M loss-of …

Application of machine learning for cytometry data

Z Hu, S Bhattacharya, AJ Butte - Frontiers in immunology, 2022 - frontiersin.org
Modern cytometry technologies present opportunities to profile the immune system at a
single-cell resolution with more than 50 protein markers, and have been widely used in both …

Comprehensive immune monitoring of clinical trials to advance human immunotherapy

FJ Hartmann, J Babdor, PF Gherardini, EAD Amir… - Cell reports, 2019 - cell.com
The success of immunotherapy has led to a myriad of clinical trials accompanied by efforts to
gain mechanistic insight and identify predictive signatures for personalization. However …

The anatomy of single cell mass cytometry data

LR Olsen, MD Leipold, CB Pedersen… - Cytometry Part …, 2019 - Wiley Online Library
Mass cytometry enables the measurement of up to 50 features on single cell. This has
catalyzed a shift toward multidimensional data analysis methods, rather than the manual …

Multiplexed ion beam imaging: insights into pathobiology

CC Liu, EF McCaffrey, NF Greenwald… - Annual Review of …, 2022 - annualreviews.org
Next-generation tools for multiplexed imaging have driven a new wave of innovation in
understanding how single-cell function and tissue structure are interrelated. In previous …

Flow cytometry data analysis: Recent tools and algorithms

S Montante, RR Brinkman - International journal of laboratory …, 2019 - Wiley Online Library
Flow cytometry (FCM) allows scientists to rapidly quantify up to 50 parameters for millions of
cells per sample. The bottleneck in the application of the technology is data analysis, and …