The physics of pulling polyproteins: a review of single molecule force spectroscopy using the AFM to study protein unfolding

ML Hughes, L Dougan - Reports on Progress in Physics, 2016 - iopscience.iop.org
One of the most exciting developments in the field of biological physics in recent years is the
ability to manipulate single molecules and probe their properties and function. Since its …

Force transmission by retrograde actin flow-induced dynamic molecular stretching of Talin

S Yamashiro, DM Rutkowski, KA Lynch, Y Liu… - Nature …, 2023 - nature.com
Force transmission at integrin-based adhesions is important for cell migration and
mechanosensing. Talin is an essential focal adhesion (FA) protein that links F-actin to …

Human Tau isoforms assemble into ribbon-like fibrils that display polymorphic structure and stability

S Wegmann, YJ Jung, S Chinnathambi… - Journal of Biological …, 2010 - ASBMB
Fibrous aggregates of Tau protein are characteristic features of Alzheimer disease. We
applied high resolution atomic force and EM microscopy to study fibrils assembled from …

Theoretical approaches for understanding the interplay between stress and chemical reactivity

GS Kochhar, GS Heverly-Coulson… - Polymer …, 2015 - Springer
The use of mechanical stresses to induce chemical reactions has attracted significant
interest in recent years. Computational modeling can play a significant role in developing a …

Protein unfolding accounts for the unusual mechanical behavior of fibrin networks

PK Purohit, RI Litvinov, AEX Brown, DE Discher… - Acta biomaterialia, 2011 - Elsevier
We describe the mechanical behavior of isotropic fibrin networks at the macroscopic scale in
terms of the nanoscale force response of fibrin molecules that are its basic building blocks …

Discriminating residue substitutions in a single protein molecule using a sub-nanopore

Z Dong, E Kennedy, M Hokmabadi, G Timp - Acs Nano, 2017 - ACS Publications
It is now possible to create, in a thin inorganic membrane, a single, sub-nanometer-diameter
pore (ie, a sub-nanopore) about the size of an amino acid residue. To explore the prospects …

A nanofibril network model of biological silks

Y Yan, Y Shao, HP Zhao, XQ Feng, ZC Deng - Journal of the Mechanics …, 2023 - Elsevier
Biological silks produced by, for examples, spiders and silkworms exhibit exceptional
mechanical properties, including high strength, toughness, and extensibility, which arise …

Mechanical response of two-dimensional polymer networks: role of topology, rate dependence, and damage accumulation

K Kothari, Y Hu, S Gupta… - Journal of Applied …, 2018 - asmedigitalcollection.asme.org
The skeleton of many natural and artificial soft materials can be abstracted as networks of
fibers/polymers interacting in a nonlinear fashion. Here, we present a numerical model for …

Sacrificial bonds and hidden length in biomaterials: A kinetic constitutive description of strength and toughness in bone

CKC Lieou, AE Elbanna, JM Carlson - … E—Statistical, Nonlinear, and Soft Matter …, 2013 - APS
Sacrificial bonds and hidden length in structural molecules account for the greatly increased
fracture toughness of biological materials compared to synthetic materials without such …

The influence of device handles in single-molecule experiments

L Bellino, G Florio, G Puglisi - Soft Matter, 2019 - pubs.rsc.org
We deduce a fully analytical model to predict the artifacts of the device handles in single
molecule force spectroscopy experiments. As we show, neglecting the handle stiffness can …