Bacterial ferrous iron transport: the Feo system

CKY Lau, KD Krewulak, HJ Vogel - FEMS microbiology reviews, 2016 - academic.oup.com
To maintain iron homeostasis within the cell, bacteria have evolved various types of iron
acquisition systems. Ferric iron (Fe3+) is the dominant species in an oxygenated …

Prediction of protein function from protein sequence and structure

JC Whisstock, AM Lesk - Quarterly reviews of biophysics, 2003 - cambridge.org
1. Introduction 3082. Plan of this article 3123. Natural mechanisms of development of novel
protein functions 3133.1 Divergence 3133.2 Recruitment 3163.3 'Mixing and matching'of …

Structural classification of zinc fingers: survey and summary

SS Krishna, I Majumdar, NV Grishin - Nucleic acids research, 2003 - academic.oup.com
Zinc fingers are small protein domains in which zinc plays a structural role contributing to the
stability of the domain. Zinc fingers are structurally diverse and are present among proteins …

The structure of the protein universe and genome evolution

EV Koonin, YI Wolf, GP Karev - Nature, 2002 - nature.com
Despite the practically unlimited number of possible protein sequences, the number of basic
shapes in which proteins fold seems not only to be finite, but also to be relatively small, with …

How well is enzyme function conserved as a function of pairwise sequence identity?

W Tian, J Skolnick - Journal of molecular biology, 2003 - Elsevier
Enzyme function conservation has been used to derive the threshold of sequence identity
necessary to transfer function from a protein of known function to an unknown protein. Using …

From words to literature in structural proteomics

A Sali, R Glaeser, T Earnest, W Baumeister - Nature, 2003 - nature.com
Technical advances on several frontiers have expanded the applicability of existing methods
in structural biology and helped close the resolution gaps between them. As a result, we are …

Describing sequence–ensemble relationships for intrinsically disordered proteins

AH Mao, N Lyle, RV Pappu - Biochemical Journal, 2013 - portlandpress.com
Intrinsically disordered proteins participate in important protein–protein and protein–nucleic
acid interactions and control cellular phenotypes through their prominence as dynamic …

Expanding protein universe and its origin from the biological Big Bang

NV Dokholyan, B Shakhnovich… - Proceedings of the …, 2002 - National Acad Sciences
The bottom-up approach to understanding the evolution of organisms is by studying
molecular evolution. With the large number of protein structures identified in the past …

Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1

NS Baliga, SJ Bjork, R Bonneau, M Pan… - Genome …, 2004 - genome.cshlp.org
We report a remarkably high UV-radiation resistance in the extremely halophilic archaeon
Halobacterium NRC-1 withstanding up to 110 J/m2 with no loss of viability. Gene knockout …

Trends in protein evolution inferred from sequence and structure analysis

L Aravind, R Mazumder, S Vasudevan… - Current opinion in …, 2002 - Elsevier
Complementary developments in comparative genomics, protein structure determination
and in-depth comparison of protein sequences and structures have provided a better …