[HTML][HTML] Ending the message: poly (A) signals then and now

NJ Proudfoot - Genes & development, 2011 - genesdev.cshlp.org
Abstract Polyadenylation [poly (A)] signals (PAS) are a defining feature of eukaryotic protein-
coding genes. The central sequence motif AAUAAA was identified in the mid-1970s and …

Cleavage and polyadenylation: Ending the message expands gene regulation

J Neve, R Patel, Z Wang, A Louey, AM Furger - RNA biology, 2017 - Taylor & Francis
Cleavage and polyadenylation (pA) is a fundamental step that is required for the maturation
of primary protein encoding transcripts into functional mRNAs that can be exported from the …

Rapid generation of Caenorhabditis elegans single-copy transgenes combining recombination-mediated cassette exchange and drug selection

ML Nonet - Genetics, 2023 - academic.oup.com
I outline a streamlined method to insert large, single-copy transgenes into the
Caenorhabditis elegans genome using recombination-mediated cassette exchange (RMCE) …

Quantitative analysis of C. elegans transcripts by Nanopore direct-cDNA sequencing reveals terminal hairpins in non trans-spliced mRNAs

F Bernard, D Dargère, O Rechavi, D Dupuy - Nature Communications, 2023 - nature.com
In nematodes and kinetoplastids, mRNA processing involves a trans-splicing step through
which a short sequence from a snRNP replaces the original 5'end of the primary transcript. It …

RNA processing in C. elegans

JJ Morton, T Blumenthal - Methods in cell biology, 2011 - Elsevier
In Caenorhabditis elegans, newly transcribed RNA is processed in several novel ways.
Although introns are removed by a canonical spliceosome, they have evolved several …

Identification of transcription start sites of trans-spliced genes: uncovering unusual operon arrangements

JJ Morton, T Blumenthal - RNA, 2011 - rnajournal.cshlp.org
In Caenorhabditis elegans, the transcripts of many genes are trans-spliced to an SL1 spliced
leader, a process that removes the RNA extending from the transcription start site to the …

RNA polymerase II C-terminal domain phosphorylation patterns in Caenorhabditis elegans operons, polycistronic gene clusters with only one promoter

A Garrido-Lecca, T Blumenthal - Molecular and cellular biology, 2010 - Am Soc Microbiol
The heptad repeat of the RNA polymerase II (RNAPII) C-terminal domain is phosphorylated
at serine 5 near gene 5′ ends and serine 2 near 3′ ends in order to recruit pre-mRNA …

Recent advances in understanding the molecular mechanisms regulating C. elegans transcription

J Gaudet, JD McGhee - … dynamics: an official publication of the …, 2010 - Wiley Online Library
We review recent studies that have advanced our understanding of the molecular
mechanisms regulating transcription in the nematode C. elegans. Topics covered include:(i) …

Localization of RNAPII and 3′ end formation factor CstF subunits on C. elegans genes and operons

A Garrido-Lecca, T Saldi, T Blumenthal - Transcription, 2016 - Taylor & Francis
Transcription termination is mechanistically coupled to pre-mRNA 3′ end formation to
prevent transcription much beyond the gene 3′ end. C. elegans, however, engages in …

Resolution of polycistronic RNA by SL2 trans-splicing is a widely conserved nematode trait

M Wenzel, C Johnston, B Müller, J Pettitt, B Connolly - RNA, 2020 - rnajournal.cshlp.org
Spliced leader trans-splicing is essential for the processing and translation of polycistronic
RNAs generated by eukaryotic operons. In C. elegans, a specialized spliced leader, SL2 …