Triazole-modified nucleic acids for the application in bioorganic and medicinal chemistry

D Baraniak, J Boryski - Biomedicines, 2021 - mdpi.com
This review covers studies which exploit triazole-modified nucleic acids in the range of
chemistry and biology to medicine. The 1, 2, 3-triazole unit, which is obtained via click …

Framework nucleic acid-wrapped protein-inorganic hybrid nanoflowers with three-stage amplified fluorescence polarization for terminal deoxynucleotidyl transferase …

X Zhang, J Xu, X Xing, L Yao, H Shang… - Biosensors and …, 2021 - Elsevier
Herein, we proposed a terminal deoxynucleotidyl transferase (TdT), a potential biomarker of
lymphoid tumors, responsive fluorescence polarization (FP)-sensing protocol based on …

A New 1, 5-Disubstituted Triazole DNA Backbone Mimic with Enhanced Polymerase Compatibility

S Epple, A Modi, YR Baker, E Wȩgrzyn… - Journal of the …, 2021 - ACS Publications
Triazole linkages (TLs) are mimics of the phosphodiester bond in oligonucleotides with
applications in synthetic biology and biotechnology. Here we report the RuAAC-catalyzed …

Development of Poly (A)-ClickSeq as a tool enabling simultaneous genome-wide poly (A)-site identification and differential expression analysis

ND Elrod, EA Jaworski, P Ji, EJ Wagner, A Routh - Methods, 2019 - Elsevier
The use of RNA-seq as a generalized tool to measure the differential expression of genes
has essentially replaced the use of the microarray. Despite the acknowledged technical …

Advanced preparation of fragment libraries enabled by oligonucleotide-modified 2′, 3′-dideoxynucleotides

J Medžiūnė, Ž Kapustina, S Žeimytė… - Communications …, 2022 - nature.com
The ever-growing demand for inexpensive, rapid, and accurate exploration of genomes calls
for refinement of existing sequencing techniques. The development of next-generation …

High-resolution microbiome analysis enabled by linking of 16S rRNA gene sequences with adjacent genomic contexts

Ž Kapustina, J Medžiūnė, G Alzbutas… - Microbial …, 2021 - microbiologyresearch.org
Sequence-based characterization of bacterial communities has long been a hostage of
limitations of both 16S rRNA gene and whole metagenome sequencing. Neither approach is …

Efficient DNA click reaction replaces enzymatic ligation

M Kollaschinski, J Sobotta, A Schalk… - Bioconjugate …, 2019 - ACS Publications
We report a chemical DNA–DNA ligation method based on copper-catalyzed azide–alkyne
cycloaddition (CuAAC). We demonstrate that ion addition dramatically influences the …

Artificial nucleic acid backbones and their applications in therapeutics, synthetic biology and biotechnology

S Epple, AH El-Sagheer, T Brown - Emerging Topics in Life …, 2021 - portlandpress.com
The modification of DNA or RNA backbones is an emerging technology for therapeutic
oligonucleotides, synthetic biology and biotechnology. Despite a plethora of reported …

Duplex‐forming Oligonucleotide of Triazole‐linked RNA

T Fujino, T Suzuki, T Ooi, K Ikemoto… - Chemistry–An Asian …, 2019 - Wiley Online Library
An oligonucleotide of triazole‐linked RNA (TLRNA) was synthesized by performing
consecutive copper‐catalyzed azide‐alkyne cycloaddition reactions for elongation. The …

Sensitive and accurate analysis of gene expression signatures enabled by oligonucleotide-labelled cDNA

Ž Kapustina, J Medžiūnė, V Dubovskaja… - RNA biology, 2022 - Taylor & Francis
High-throughput RNA sequencing offers a comprehensive analysis of transcriptome
complexity originated from regulatory events, such as differential gene expression …