Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

TL Parchman, KS Geist, JA Grahnen, CW Benkman… - BMC genomics, 2010 - Springer
Background Massively parallel sequencing of cDNA is now an efficient route for generating
enormous sequence collections that represent expressed genes. This approach provides a …

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

A Kovach, JL Wegrzyn, G Parra, C Holt, GE Bruening… - BMC genomics, 2010 - Springer
Background In today's age of genomic discovery, no attempt has been made to
comprehensively sequence a gymnosperm genome. The largest genus in the coniferous …

Evolution of Genome Size and Complexity in Pinus

AM Morse, DG Peterson, MN Islam-Faridi, KE Smith… - PloS one, 2009 - journals.plos.org
Background Genome evolution in the gymnosperm lineage of seed plants has given rise to
many of the most complex and largest plant genomes, however the elements involved are …

[图书][B] The conifers

DB Neale, NC Wheeler, DB Neale, NC Wheeler - 2019 - Springer
The conifers are a diverse and ancient group of seed plants of monophyletic origin that
arose more than 300 million years ago (Rothwell and Scheckler 1988). They are uniformly …

Polyploidization as a retraction force in plant genome evolution: sequence rearrangements in triticale

M Bento, HS Pereira, M Rocheta, P Gustafson… - PLoS …, 2008 - journals.plos.org
Background Polyploidization is a major evolutionary process in plants where hybridization
and chromosome doubling induce enormous genomic stress and can generate genetic and …

Karyotype evolution in the Pinaceae: implication with molecular phylogeny

KK Nkongolo, M Mehes-Smith - Genome, 2012 - cdnsciencepub.com
The family Pinaceae is made up mostly of diploid species (2 n= 24). Systematization of
karyotype analysis was developed to make comparison of intra-and interspecific karyotypes …

Comparative transcriptomics of a complex of four European pine species

W Wachowiak, U Trivedi, A Perry, S Cavers - BMC genomics, 2015 - Springer
Background Pinus sylvestris, P. mugo, P. uliginosa and P. uncinata are closely related but
phenotypically and ecologically very distinct European pine species providing an excellent …

Insights into the loblolly pine genome: characterization of BAC and fosmid sequences

JL Wegrzyn, BY Lin, JJ Zieve, WM Dougherty… - PLoS …, 2013 - journals.plos.org
Despite their prevalence and importance, the genome sequences of loblolly pine, Norway
spruce, and white spruce, three ecologically and economically important conifer species, are …

Molecular cytogenetics of forest trees

T Ribeiro, A Barao, W Viegas… - Cytogenetic and Genome …, 2008 - karger.com
The economic and ecological importance of forest trees, as well as their unique biological
features, has recently raised the level of interest in studies on their genomes, including …

Genome merger: from sequence rearrangements in triticale to their elimination in wheat–rye addition lines

M Bento, P Gustafson, W Viegas, M Silva - Theoretical and applied …, 2010 - Springer
Genetic and epigenetic modifications resulting from different genomes adjusting to a
common nuclear environment have been observed in polyploids. Sequence restructuring …