[HTML][HTML] Predicting and improving the microbial removal of organic micropollutants during wastewater treatment: A review

AB Rios-Miguel, TJHM van Bergen, C Zillien… - Chemosphere, 2023 - Elsevier
Organic micropollutants (OMPs) consist of widely used chemicals such as pharmaceuticals
and pesticides that can persist in surface and groundwaters at low concentrations (ng/L to …

Biodegradation of volatile organic compounds and their effects on biodegradability under co-existing conditions

M Yoshikawa, M Zhang, K Toyota - Microbes and environments, 2017 - jstage.jst.go.jp
Volatile organic compounds (VOCs) are major pollutants that are found in contaminated
sites, particularly in developed countries such as Japan. Various microorganisms that …

[HTML][HTML] The role of mobile genetic elements in organic micropollutant degradation during biological wastewater treatment

ABR Miguel, MSM Jetten, CU Welte - Water Research X, 2020 - Elsevier
Wastewater treatment plants (WWTPs) are crucial for producing clean effluents from
polluting sources such as hospitals, industries, and municipalities. In recent decades, many …

Construction and optimization of a heterologous pathway for protocatechuate catabolism in Escherichia coli enables bioconversion of model aromatic compounds

SM Clarkson, RJ Giannone… - Applied and …, 2017 - Am Soc Microbiol
The production of biofuels from lignocellulose yields a substantial lignin by-product stream
that currently has few applications. Biological conversion of lignin-derived compounds into …

Evolutionary stalling and a limit on the power of natural selection to improve a cellular module

S Venkataram, R Monasky… - Proceedings of the …, 2020 - National Acad Sciences
Cells consist of molecular modules which perform vital biological functions. Cellular
modules are key units of adaptive evolution because organismal fitness depends on their …

The genetic landscape of a metabolic interaction

TN Nguyen, C Ingle, S Thompson… - Nature communications, 2024 - nature.com
While much prior work has explored the constraints on protein sequence and evolution
induced by physical protein-protein interactions, the sequence-level constraints emerging …

Engineering Proteins Using Statistical Models of Coevolutionary Sequence Information

JC Dinan, JW McCormick… - Cold Spring Harbor …, 2024 - cshperspectives.cshlp.org
Homologous protein sequences are wonderfully diverse, indicating many possible
evolutionary “solutions” to the encoding of function. Consequently, one can construct …

Identification and widespread environmental distribution of a gene cassette implicated in anaerobic dichloromethane degradation

RW Murdoch, G Chen, F Kara Murdoch… - Global Change …, 2022 - Wiley Online Library
Anthropogenic activities and natural processes release dichloromethane (DCM, methylene
chloride), a toxic chemical with substantial ozone‐depleting capacity. Specialized anaerobic …

A decade of genome sequencing has revolutionized studies of experimental evolution

EL Bruger, CJ Marx - Current Opinion in Microbiology, 2018 - Elsevier
Highlights•Genome sequencing of isolates is the most direct way to determine evolved
changes.•Sequencing of mixed population samples reveals existing variation and its …

A two‐step evolutionary process establishes a non‐native vitamin B6 pathway in Bacillus subtilis

J Rosenberg, KYC Yeak… - Environmental …, 2018 - Wiley Online Library
Summary Pyridoxal 5′‐phosphate (PLP), the most important form of vitamin B6 serves as a
cofactor for many proteins. Two alternative pathways for de novo PLP biosynthesis are …