Flexible nets: the roles of intrinsic disorder in protein interaction networks

AK Dunker, MS Cortese, P Romero… - The FEBS …, 2005 - Wiley Online Library
Proteins participate in complex sets of interactions that represent the mechanistic foundation
for much of the physiology and function of the cell. These protein–protein interactions are …

Prediction of protein disorder based on IUPred

Z Dosztányi - Protein Science, 2018 - Wiley Online Library
Many proteins contain intrinsically disordered regions (IDRs), functional polypeptide
segments that in isolation adopt a highly flexible conformational ensemble instead of a …

The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins

D Kozakov, LE Grove, DR Hall, T Bohnuud… - Nature protocols, 2015 - nature.com
FTMap is a computational mapping server that identifies binding hot spots of
macromolecules—ie, regions of the surface with major contributions to the ligand-binding …

Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners

CJ Oldfield, J Meng, JY Yang, MQ Yang, VN Uversky… - BMC genomics, 2008 - Springer
Background Proteins are involved in many interactions with other proteins leading to
networks that regulate and control a wide variety of physiological processes. Some of these …

β-Hairpin peptidomimetics: design, structures and biological activities

JA Robinson - Accounts of chemical research, 2008 - ACS Publications
The folded 3D structures of peptides and proteins provide excellent starting points for the
design of synthetic molecules that mimic key epitopes (or surface patches) involved in …

Druggability assessment of allosteric proteins by dynamics simulations in the presence of probe molecules

A Bakan, N Nevins, AS Lakdawala… - Journal of chemical …, 2012 - ACS Publications
Druggability assessment of a target protein has emerged in recent years as an important
concept in hit-to-lead optimization. A reliable and physically relevant measure of druggability …

Rational design of topographical helix mimics as potent inhibitors of protein–protein interactions

BB Lao, K Drew, DA Guarracino… - Journal of the …, 2014 - ACS Publications
Protein–protein interactions encompass large surface areas, but often a handful of key
residues dominate the binding energy landscape. Rationally designed small molecule …

Targeting Mdm2 and Mdmx in cancer therapy: better living through medicinal chemistry?

M Wade, GM Wahl - Molecular cancer research, 2009 - AACR
Genomic and proteomic profiling of human tumor samples and tumor-derived cell lines are
essential for the realization of personalized therapy in oncology. Identification of the …

Targeting protein–protein interactions: lessons from p53/MDM2

JK Murray, SH Gellman - Peptide Science: Original Research …, 2007 - Wiley Online Library
The tremendous challenge of inhibiting therapeutically important protein–protein
interactions has created the opportunity to extend traditional medicinal chemistry to a new …

Resistance mechanisms to inhibitors of p53-MDM2 interactions in cancer therapy: can we overcome them?

L Haronikova, O Bonczek, P Zatloukalova… - Cellular & molecular …, 2021 - Springer
Since the discovery of the first MDM2 inhibitors, we have gained deeper insights into the
cellular roles of MDM2 and p53. In this review, we focus on MDM2 inhibitors that bind to the …