A self-supervised deep learning method for data-efficient training in genomics

HA Gündüz, M Binder, XY To, R Mreches… - Communications …, 2023 - nature.com
Deep learning in bioinformatics is often limited to problems where extensive amounts of
labeled data are available for supervised classification. By exploiting unlabeled data, self …

TEPI: Taxonomy-Aware Embedding and Pseudo-Imaging for Scarcely-Labeled Zero-Shot Genome Classification

SN Aakur, VR Laguduva, P Ramamurthy… - IEEE Journal of …, 2024 - ieeexplore.ieee.org
A species' genetic code or genome encodes valuable evolutionary, biological, and
phylogenetic information that aids in species recognition, taxonomic classification, and …

Learning Genomic Sequence Representations using Graph Neural Networks over De Bruijn Graphs

K Kapuśniak, M Burger, G Rätsch, A Joudaki - arXiv preprint arXiv …, 2023 - arxiv.org
The rapid expansion of genomic sequence data calls for new methods to achieve robust
sequence representations. Existing techniques often neglect intricate structural details …

Scalable Pathogen Detection from Next Generation DNA Sequencing with Deep Learning

S Narayanan, SN Aakur, P Ramamurthy… - arXiv preprint arXiv …, 2022 - arxiv.org
Next-generation sequencing technologies have enhanced the scope of Internet-of-Things
(IoT) to include genomics for personalized medicine through the increased availability of an …

ProtoKD: Learning from Extremely Scarce Data for Parasite Ova Recognition

S Trehan, U Ramachandran… - … on Machine Learning …, 2023 - ieeexplore.ieee.org
Developing reliable computational frameworks for early parasite detection, particularly at the
ova (or egg) stage, is crucial for advancing healthcare and effectively managing potential …