Transformer, one of the latest technological advances of deep learning, has gained prevalence in natural language processing or computer vision. Since medical imaging bear …
J Qi, H Sun, Y Zhang, Z Wang, Z Xun, Z Li… - Nature …, 2022 - nature.com
Colorectal cancer (CRC) is among the most common malignancies with limited treatments other than surgery. The tumor microenvironment (TME) profiling enables the discovery of …
Y Han, Y Wang, X Dong, D Sun, Z Liu… - Nucleic acids …, 2023 - academic.oup.com
Abstract The Tumor Immune Single Cell Hub 2 (TISCH2) is a resource of single-cell RNA- seq (scRNA-seq) data from human and mouse tumors, which enables comprehensive …
Quantitative evaluation of tissue images is crucial for computational pathology (CPath) tasks, requiring the objective characterization of histopathological entities from whole-slide images …
CJ Liu, FF Hu, GY Xie, YR Miao, XW Li… - Briefings in …, 2023 - academic.oup.com
Cancer initiation and progression are likely caused by the dysregulation of biological pathways. Gene set analysis (GSA) could improve the signal-to-noise ratio and identify …
D Tang, M Chen, X Huang, G Zhang, L Zeng… - PLoS …, 2023 - journals.plos.org
Graphics are widely used to provide summarization of complex data in scientific publications. Although there are many tools available for drawing graphics, their use is …
D Maeser, RF Gruener, RS Huang - Briefings in bioinformatics, 2021 - academic.oup.com
Cell line drug screening datasets can be utilized for a range of different drug discovery applications from drug biomarker discovery to building translational models of drug …
WR Becker, SA Nevins, DC Chen, R Chiu… - Nature …, 2022 - nature.com
To chart cell composition and cell state changes that occur during the transformation of healthy colon to precancerous adenomas to colorectal cancer (CRC), we generated single …
A Jamshidi, MC Liu, EA Klein, O Venn, E Hubbell… - Cancer Cell, 2022 - cell.com
Summary In the Circulating Cell-free Genome Atlas (NCT02889978) substudy 1, we evaluate several approaches for a circulating cell-free DNA (cfDNA)-based multi-cancer …