Anomalous diffusion, aging, and nonergodicity of scaled Brownian motion with fractional Gaussian noise: Overview of related experimental observations and models

W Wang, R Metzler, AG Cherstvy - Physical Chemistry Chemical …, 2022 - pubs.rsc.org
How does a systematic time-dependence of the diffusion coefficient D (t) affect the ergodic
and statistical characteristics of fractional Brownian motion (FBM)? Here, we answer this …

Mechanisms underlying anomalous diffusion in the plasma membrane

D Krapf - Current topics in membranes, 2015 - Elsevier
The plasma membrane is a complex fluid where lipids and proteins undergo diffusive motion
critical to biochemical reactions. Through quantitative imaging analyses such as single …

Anomalous diffusion models and their properties: non-stationarity, non-ergodicity, and ageing at the centenary of single particle tracking

R Metzler, JH Jeon, AG Cherstvy… - Physical Chemistry …, 2014 - pubs.rsc.org
Modern microscopic techniques following the stochastic motion of labelled tracer particles
have uncovered significant deviations from the laws of Brownian motion in a variety of …

Elucidating the origin of heterogeneous anomalous diffusion in the cytoplasm of mammalian cells

A Sabri, X Xu, D Krapf, M Weiss - Physical Review Letters, 2020 - APS
Diffusion of tracer particles in the cytoplasm of mammalian cells is often anomalous with a
marked heterogeneity even within individual particle trajectories. Despite considerable …

Loss of lamin A function increases chromatin dynamics in the nuclear interior

I Bronshtein, E Kepten, I Kanter, S Berezin… - Nature …, 2015 - nature.com
Chromatin is organized in a highly ordered yet dynamic manner in the cell nucleus, but the
principles governing this organization remain unclear. Similarly, it is unknown whether, and …

Time averaging and emerging nonergodicity upon resetting of fractional Brownian motion and heterogeneous diffusion processes

W Wang, AG Cherstvy, H Kantz, R Metzler, IM Sokolov - Physical Review E, 2021 - APS
How different are the results of constant-rate resetting of anomalous-diffusion processes in
terms of their ensemble-averaged versus time-averaged mean-squared displacements …

Anomalous diffusion and nonergodicity for heterogeneous diffusion processes with fractional Gaussian noise

W Wang, AG Cherstvy, X Liu, R Metzler - Physical Review E, 2020 - APS
Heterogeneous diffusion processes (HDPs) feature a space-dependent diffusivity of the form
D (x)= D 0| x| α. Such processes yield anomalous diffusion and weak ergodicity breaking …

Anomalous diffusion, non-Gaussianity, nonergodicity, and confinement in stochastic-scaled Brownian motion with diffusing diffusivity dynamics

Y Li, K Suleiman, Y Xu - Physical Review E, 2024 - APS
Scaled Brownian motions (SBMs) with power-law time-dependent diffusivity have been used
to describe various types of anomalous diffusion yet Gaussian observed in granular gases …

Guidelines for the fitting of anomalous diffusion mean square displacement graphs from single particle tracking experiments

E Kepten, A Weron, G Sikora, K Burnecki, Y Garini - PLoS One, 2015 - journals.plos.org
Single particle tracking is an essential tool in the study of complex systems and biophysics
and it is commonly analyzed by the time-averaged mean square displacement (MSD) of the …

[HTML][HTML] Multiscale modeling of genome organization with maximum entropy optimization

X Lin, Y Qi, AP Latham, B Zhang - The Journal of chemical physics, 2021 - pubs.aip.org
ABSTRACT Three-dimensional (3D) organization of the human genome plays an essential
role in all DNA-templated processes, including gene transcription, gene regulation, and …