Eight kinetically stable but thermodynamically activated molecules that power cell metabolism

CT Walsh, BP Tu, Y Tang - Chemical reviews, 2018 - ACS Publications
Contemporary analyses of cell metabolism have called out three metabolites: ATP, NADH,
and acetyl-CoA, as sentinel molecules whose accumulation represent much of the purpose …

Genes, enzymes and regulation of arginine biosynthesis in plants

RD Slocum - Plant Physiology and Biochemistry, 2005 - Elsevier
Arabidopsis genes encoding enzymes for each of the eight steps in l-arginine (Arg)
synthesis were identified, based upon sequence homologies with orthologs from other …

Allosteric regulation of CAD modulates de novo pyrimidine synthesis during the cell cycle

J Shin, H Mir, MA Khurram, KM Fujihara… - Nature …, 2023 - nature.com
Metabolism is a fundamental cellular process that is coordinated with cell cycle progression.
Despite this association, a mechanistic understanding of cell cycle phase-dependent …

Combined proteomic and transcriptomic analysis of the antimicrobial mechanism of tannic acid against Staphylococcus aureus

J Wang, Z Sheng, Y Liu, X Chen, S Wang… - Frontiers in …, 2023 - frontiersin.org
Staphylococcus aureus is a zoonotic opportunistic pathogen that represents a significant
threat to public health. Previous studies have shown that tannic acid (TA) has an inhibitory …

Nucleotides, nucleosides, and nucleobases

KF Jensen, G Dandanell, B Hove-Jensen… - EcoSal …, 2008 - Am Soc Microbiol
We review literature on the metabolism of ribo-and deoxyribonucleotides, nucleosides, and
nucleobases in Escherichia coli and Salmonella, including biosynthesis, degradation …

Regulation of carbamoylphosphate synthesis in Escherichia coli: an amazing metabolite at the crossroad of arginine and pyrimidine biosynthesis

D Charlier, P Nguyen Le Minh, M Roovers - Amino Acids, 2018 - Springer
In all organisms, carbamoylphosphate (CP) is a precursor common to the synthesis of
arginine and pyrimidines. In Escherichia coli and most other Gram-negative bacteria, CP is …

CAD, a multienzymatic protein at the head of de novo pyrimidine biosynthesis

F del Caño-Ochoa, M Moreno-Morcillo… - … Protein Complexes II …, 2019 - Springer
CAD is a 1.5 MDa particle formed by hexameric association of a 250 kDa protein that carries
the enzymatic activities for the first three steps in the de novo biosynthesis of pyrimidine …

Tunneling of intermediates in enzyme-catalyzed reactions

A Weeks, L Lund, FM Raushel - Current opinion in chemical biology, 2006 - Elsevier
A fascinating group of enzymes has been shown to possess multiple active sites connected
by intramolecular tunnels for the passage of reactive intermediates from the site of …

Induction of the permeability transition and cytochrome c release by 15-deoxy-Δ12,14-prostaglandin J2 in mitochondria

A Landar, S Shiva, AL Levonen, JY Oh… - Biochemical …, 2006 - portlandpress.com
The electrophilic lipid 15-deoxy-Δ12, 14-prostaglandin J2 (15d-PGJ2) is known to allow
adaptation to oxidative stress in cells at low concentrations and apoptosis at high levels. The …

The case against a Darwinian origin of protein folds

DD Axe - BIO-complexity, 2010 - bio-complexity.org
Four decades ago, several scientists suggested that the impossibility of any evolutionary
process sampling anything but a miniscule fraction of the possible protein sequences posed …