Long non-coding RNAs in the regulation of gene expression: physiology and disease

JCR Fernandes, SM Acuña, JI Aoki, LM Floeter-Winter… - Non-coding RNA, 2019 - mdpi.com
The identification of RNAs that are not translated into proteins was an important
breakthrough, defining the diversity of molecules involved in eukaryotic regulation of gene …

History, discovery, and classification of lncRNAs

J Jarroux, A Morillon, M Pinskaya - Long non coding RNA biology, 2017 - Springer
Abstract The RNA World Hypothesis suggests that prebiotic life revolved around RNA
instead of DNA and proteins. Although modern cells have changed significantly in 4 billion …

When long noncoding becomes protein coding

CCR Hartford, A Lal - Molecular and cellular biology, 2020 - Taylor & Francis
Recent advancements in genetic and proteomic technologies have revealed that more of the
genome encodes proteins than originally thought possible. Specifically, some putative long …

Structured elements drive extensive circular RNA translation

CK Chen, R Cheng, J Demeter, J Chen… - Molecular cell, 2021 - cell.com
The human genome encodes tens of thousands circular RNAs (circRNAs) with mostly
unknown functions. Circular RNAs require internal ribosome entry sites (IRES) if they are to …

Control of gene expression through the nonsense-mediated RNA decay pathway

A Nickless, JM Bailis, Z You - Cell & bioscience, 2017 - Springer
Nonsense-mediated RNA decay (NMD) was originally discovered as a cellular surveillance
pathway that safeguards the quality of mRNA transcripts in eukaryotic cells. In its canonical …

LncRNA-encoded peptide: functions and predicting methods

J Xing, H Liu, W Jiang, L Wang - Frontiers in oncology, 2021 - frontiersin.org
Long non-coding RNA (lncRNA) was originally defined as the representative of the non-
coding RNAs and unable to encode. However, recent reports suggest that some lncRNAs …

The affinity of the S9. 6 antibody for double-stranded RNAs impacts the accurate mapping of R-loops in fission yeast

SR Hartono, A Malapert, P Legros, P Bernard… - Journal of molecular …, 2018 - Elsevier
R-loops, which result from the formation of stable DNA: RNA hybrids, can both threaten
genome integrity and act as physiological regulators of gene expression and chromatin …

RNA folding and functions of RNA helicases in ribosome biogenesis

V Mitterer, B Pertschy - RNA biology, 2022 - Taylor & Francis
Eukaryotic ribosome biogenesis involves the synthesis of ribosomal RNA (rRNA) and its
stepwise folding into the unique structure present in mature ribosomes. rRNA folding starts …

The DDX5/Dbp2 subfamily of DEAD‐box RNA helicases

Z Xing, WK Ma, EJ Tran - Wiley Interdisciplinary Reviews: RNA, 2019 - Wiley Online Library
The mammalian DEAD‐box RNA helicase DDX5, its paralog DDX17, and their orthologs in
Saccharomyces cerevisiae and Drosophila melanogaster, namely Dbp2 and Rm62, define a …

Functional micropeptides encoded by long non-coding RNAs: a comprehensive review

J Pan, R Wang, F Shang, R Ma, Y Rong… - Frontiers in molecular …, 2022 - frontiersin.org
Long non-coding RNAs (lncRNAs) were originally defined as non-coding RNAs (ncRNAs)
which lack protein-coding ability. However, with the emergence of technologies such as …