Protein design: From the aspect of water solubility and stability

R Qing, S Hao, E Smorodina, D Jin, A Zalevsky… - Chemical …, 2022 - ACS Publications
Water solubility and structural stability are key merits for proteins defined by the primary
sequence and 3D-conformation. Their manipulation represents important aspects of the …

Collapse and Protein Folding: Should We Be Surprised that Biothermodynamics Works So Well?

TR Sosnick, MC Baxa - Annual Review of Biophysics, 2024 - annualreviews.org
A complete understanding of protein function and dynamics requires the characterization of
the multiple thermodynamic states, including the denatured state ensemble (DSE). Whereas …

Small-molecule binding and sensing with a designed protein family

GR Lee, SJ Pellock, C Norn, D Tischer, J Dauparas… - bioRxiv, 2023 - biorxiv.org
Despite transformative advances in protein design with deep learning, the design of small-
molecule–binding proteins and sensors for arbitrary ligands remains a grand challenge …

Advances in design of protein folds and assemblies

A Ljubetič, H Gradišar, R Jerala - Current Opinion in Chemical Biology, 2017 - Elsevier
Highlights•De novo single chain proteins can be designed with atomic accuracy.•Multi-chain
protein assemblies can be created based on different symmetries.•Extremely large …

A second backbone: the contribution of a buried asparagine ladder to the global and local stability of a leucine-rich repeat protein

SA Klein, A Majumdar, D Barrick - Biochemistry, 2019 - ACS Publications
Parallel β-sheet-containing repeat proteins often display a structural motif in which
conserved asparagines form a continuous ladder buried within the hydrophobic core. In …

Towards designing new nano-scale protein architectures

J Aupič, F Lapenta, Ž Strmšek… - Essays in Biochemistry, 2016 - portlandpress.com
The complexity of designed bionano-scale architectures is rapidly increasing mainly due to
the expanding field of DNA-origami technology and accurate protein design approaches …

Surface Engineering of Top7 to Facilitate Structure Determination

Y Ito, T Araki, S Shiga, H Konno, K Makabe - International Journal of …, 2022 - mdpi.com
Top7 is a de novo designed protein whose amino acid sequence has no evolutional trace.
Such a property makes Top7 a suitable scaffold for studying the pure nature of protein and …

Bioanalytical Techniques for Bionanotechnology

YC Lee, JY Moon, YC Lee, JY Moon - Introduction to Bionanotechnology, 2020 - Springer
Abstract As Richard Feynman has observed, what we are observing living organisms, more
specifically, how cells are working is a fundamental element to understand biology better …

Die Konstruktion einer artifiziellen Oxidoreduktase-Implementierung des CXXC-Tetrapeptids in das Strukturprotein M7

M Voigtmann - 2018 - repo.bibliothek.uni-halle.de
Die CXXC-Oxidoreduktasen steuern eine Vielzahl zellulärer Redoxprozesse. Dabei ist
unklar, wie deren Proteinstruktur die beobachtbare Aktivitätsbreite erzeugt. Ziel der Arbeit …

[PDF][PDF] Die Konstruktion einer artifiziellen Oxidoreduktase

R Glockshuber, MT Stubbs - opendata.uni-halle.de
In dieser Arbeit wurde der erste Designversuch zur Umwandlung des Strukturproteins M7
hin zu einem redoxaktiven Protein realisiert. Dabei widmet sich diese Arbeit primär den …