Soil structure and microbiome functions in agroecosystems

M Hartmann, J Six - Nature Reviews Earth & Environment, 2023 - nature.com
Soil microbiomes drive key functions in agroecosystems, determining soil fertility, crop
productivity and stress tolerance. The microbiome is intricately linked with soil structure …

Life and death in the soil microbiome: how ecological processes influence biogeochemistry

NW Sokol, E Slessarev, GL Marschmann… - Nature Reviews …, 2022 - nature.com
Soil microorganisms shape global element cycles in life and death. Living soil
microorganisms are a major engine of terrestrial biogeochemistry, driving the turnover of soil …

Bacterial defences: mechanisms, evolution and antimicrobial resistance

WPJ Smith, BR Wucher, CD Nadell… - Nature Reviews …, 2023 - nature.com
Throughout their evolutionary history, bacteria have faced diverse threats from other
microorganisms, including competing bacteria, bacteriophages and predators. In response …

Microbiome diversity protects against pathogens by nutrient blocking

F Spragge, E Bakkeren, MT Jahn, E BN Araujo… - Science, 2023 - science.org
The human gut microbiome plays an important role in resisting colonization of the host by
pathogens, but we lack the ability to predict which communities will be protective. We …

Three faces of biofilms: a microbial lifestyle, a nascent multicellular organism, and an incubator for diversity

A Penesyan, IT Paulsen, S Kjelleberg… - npj Biofilms and …, 2021 - nature.com
Biofilms are organised heterogeneous assemblages of microbial cells that are encased
within a self-produced matrix. Current estimates suggest that up to 80% of bacterial and …

[HTML][HTML] Towards the sustainable discovery and development of new antibiotics

M Miethke, M Pieroni, T Weber, M Brönstrup… - Nature Reviews …, 2021 - nature.com
An ever-increasing demand for novel antimicrobials to treat life-threatening infections
caused by the global spread of multidrug-resistant bacterial pathogens stands in stark …

Ecology and evolution of antimicrobial resistance in bacterial communities

MJ Bottery, JW Pitchford, VP Friman - The ISME Journal, 2021 - academic.oup.com
Accumulating evidence suggests that the response of bacteria to antibiotics is significantly
affected by the presence of other interacting microbes. These interactions are not typically …

Trophic interactions and the drivers of microbial community assembly

M Gralka, R Szabo, R Stocker, OX Cordero - Current Biology, 2020 - cell.com
Despite numerous surveys of gene and species content in heterotrophic microbial
communities, such as those found in animal guts, oceans, or soils, it is still unclear whether …

The SMC-family Wadjet complex protects bacteria from plasmid transformation by recognition and cleavage of closed-circular DNA

A Deep, Y Gu, YQ Gao, KM Ego, MA Herzik, H Zhou… - Molecular Cell, 2022 - cell.com
Self versus non-self discrimination is a key element of innate and adaptive immunity across
life. In bacteria, CRISPR-Cas and restriction-modification systems recognize non-self nucleic …

In vitro interaction network of a synthetic gut bacterial community

AS Weiss, AG Burrichter, AC Durai Raj… - The ISME …, 2022 - academic.oup.com
A key challenge in microbiome research is to predict the functionality of microbial
communities based on community membership and (meta)-genomic data. As central …